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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036015 through 18771 annotations produced 1 hits



(CG3088):

Annotation Number : CG3088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036015
Gbrowse : chr3L:9593589-9594414 (-) // 100.0 //
Probeset : 1624285_at
Accessions : protein= NP_648334;, nucleotide= NM_140077;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036015.
BDGP gene expression has embryonic in situ data for CG3088: 4 pix of staining in 1 body parts.
Homophila reports that CG3088 is a close match (3e-11) to human gene IRIDA;TMPRSS6 (NP_705837), a gene associated with Iron-refractory iron deficiency anemia, 206200 (3).
BioGrid reports that CG3088 interacts with CG4069 .
VDRC has 2 RNAi stocks for FBgn0036015 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 01 of 4 0.00Down
Head4390 ± 2664 of 4 7.90Up
Eye4 ± 20 of 4 0.01Down
Thoracicoabdominal ganglion14 ± 12 of 4 0.00Down
Salivary gland25 ± 60 of 4 0.05Down
Crop13 ± 20 of 4 0.00Down
Midgut22 ± 20 of 4 0.00Down
Tubule10 ± 10 of 4 0.00Down
Hindgut25 ± 13 of 4 0.00Down
Heart5 ± 11 of 4 0.01Down
Fat body15 ± 30 of 4 0.03Down
Ovary9 ± 10 of 4 0.00Down
Testis11 ± 02 of 4 0.00Down
Male accessory glands12 ± 30 of 4 0.00Down
Virgin spermatheca12 ± 21 of 4 0.02Down
Mated spermatheca16 ± 31 of 4 0.03Down
Adult carcass46 ± 211 of 4 0.10Down
Larval CNS4 ± 40 of 4 0.01Down
Larval Salivary gland22 ± 11 of 4 0.04Down
Larval midgut24 ± 00 of 4 0.04Down
Larval tubule10 ± 20 of 4 0.00Down
Larval hindgut13 ± 11 of 4 0.02Down
Larval fat body22 ± 32 of 4 0.00Down
Larval trachea4 ± 20 of 4 0.01Down
Larval carcass17 ± 20 of 4 0.03Down
S2 cells (growing)11 ± 20 of 4 0.02Down
Whole fly554 ± 174 of 4

Looking for FBgn0036015. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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