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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036017 through 18771 annotations produced 1 hits



(CG3280):

Annotation Number : CG3280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036017
Gbrowse : chr3L:9596941-9606904 (+) // 100.0 //
Probeset : 1641091_at
Accessions : protein= NP_648336;, nucleotide= NM_140079;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0036017.
Homophila reports that CG3280 is a close match (2e-11) to human gene EV1;EVER1 (NP_009198), a gene associated with Epidermodysplasia verruciformis, 226400 (3).
VDRC has 2 RNAi stocks for FBgn0036017 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 00 of 4 1.60None
Head9 ± 10 of 4 1.50None
Eye3 ± 10 of 4 0.56None
Thoracicoabdominal ganglion13 ± 11 of 4 2.20Up
Salivary gland5 ± 10 of 4 0.81None
Crop6 ± 20 of 4 1.00None
Midgut3 ± 00 of 4 0.60None
Tubule10 ± 10 of 4 1.70Up
Hindgut9 ± 10 of 4 1.50None
Heart2 ± 00 of 4 0.32None
Fat body3 ± 20 of 4 0.54None
Ovary3 ± 10 of 4 0.50None
Testis9 ± 21 of 4 1.50None
Male accessory glands12 ± 20 of 4 2.00None
Virgin spermatheca4 ± 20 of 4 0.77None
Mated spermatheca6 ± 10 of 4 0.96None
Adult carcass2 ± 00 of 4 0.40None
Larval CNS2 ± 00 of 4 0.32None
Larval Salivary gland11 ± 10 of 4 1.86None
Larval midgut7 ± 20 of 4 1.11None
Larval tubule9 ± 10 of 4 1.40None
Larval hindgut5 ± 10 of 4 0.88None
Larval fat body7 ± 10 of 4 1.30None
Larval trachea6 ± 40 of 4 0.99None
Larval carcass3 ± 00 of 4 0.48None
S2 cells (growing)3 ± 00 of 4 0.53None
Whole fly6 ± 20 of 4

Looking for FBgn0036017. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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