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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036018 through 18771 annotations produced 1 hits



(CG3335):

Annotation Number : CG3335
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036018
Gbrowse : chr3L:9617382-9620421 (+) // 99.86 //
Probeset : 1631433_at
Accessions : protein= NP_648337;, nucleotide= NM_140080;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0036018.
BioGrid reports that CG3335 interacts with CG4229 CG8857 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 14 of 4 0.50Down
Head41 14 of 4 0.50Down
Eye38 34 of 4 0.46Down
Thoracicoabdominal ganglion55 44 of 4 0.70Down
Salivary gland99 94 of 4 1.19None
Crop75 24 of 4 0.90None
Midgut44 34 of 4 0.50Down
Tubule51 54 of 4 0.60Down
Hindgut40 14 of 4 0.50Down
Heart39 24 of 4 0.48Down
Fat body68 34 of 4 0.83None
Ovary177 84 of 4 2.10Up
Testis40 24 of 4 0.50Down
Male accessory glands118 44 of 4 1.40Up
Virgin spermatheca68 54 of 4 0.82None
Mated spermatheca100 44 of 4 1.21None
Adult carcass60 14 of 4 0.70Down
Larval CNS114 64 of 4 1.38Up
Larval Salivary gland80 94 of 4 0.97None
Larval midgut43 24 of 4 0.52Down
Larval tubule38 24 of 4 0.50Down
Larval hindgut62 64 of 4 0.75None
Larval fat body30 24 of 4 0.40Down
Larval trachea82 194 of 4 1.00None
Larval carcass73 114 of 4 0.89None
S2 cells (growing)92 34 of 4 1.12None
Whole fly83 64 of 4

Looking for FBgn0036018. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime