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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036020 through 18771 annotations produced 1 hits



(CG8336):

Annotation Number : CG8336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036020
Gbrowse : chr3L:9621775-9624898 (+) // 100.0 //
Probeset : 1635293_s_at
Accessions : protein= NP_648338; /// NP_729517; /// NP_729518;, nucleotide= NM_140081; /// NM_168354; /// NM_168355;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0005488 // binding //
FlyMine data for FBgn0036020.
BDGP gene expression has embryonic in situ data for CG8336: 13 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0036020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 24 of 4 0.90None
Head58 34 of 4 0.50Down
Eye93 34 of 4 0.85Down
Thoracicoabdominal ganglion93 54 of 4 0.80None
Salivary gland146 64 of 4 1.32Up
Crop179 74 of 4 1.60Up
Midgut77 54 of 4 0.70Down
Tubule173 64 of 4 1.60Up
Hindgut117 24 of 4 1.10None
Heart74 44 of 4 0.67Down
Fat body85 114 of 4 0.77Down
Ovary171 84 of 4 1.50Up
Testis387 134 of 4 3.50Up
Male accessory glands96 64 of 4 0.90None
Virgin spermatheca50 24 of 4 0.45Down
Mated spermatheca39 14 of 4 0.36Down
Adult carcass77 24 of 4 0.70Down
Larval CNS128 84 of 4 1.16Up
Larval Salivary gland142 54 of 4 1.29Up
Larval midgut58 14 of 4 0.53Down
Larval tubule168 74 of 4 1.50Up
Larval hindgut110 34 of 4 1.00None
Larval fat body103 224 of 4 0.90None
Larval trachea101 104 of 4 0.92None
Larval carcass75 44 of 4 0.69Down
S2 cells (growing)118 34 of 4 1.07None
Whole fly110 44 of 4

Looking for FBgn0036020. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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