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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036024 through 18771 annotations produced 1 hits



(CG18180):

Annotation Number : CG18180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036024
Gbrowse : chr3L:9634115-9635013 (+) // 100.0 //
Probeset : 1638413_at
Accessions : protein= NP_648341;, nucleotide= NM_140084;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036024.
Homophila reports that CG18180 is a close match (3e-11) to human gene CTRC;CLCR (NP_009203), a gene associated with {Pancreatitis, chronic, susceptibilty to}, 167800 (3).
BioGrid reports that CG18180 interacts with CG32036 CG32514 .
VDRC has 4 RNAi stocks for FBgn0036024 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head104 1001 of 4 0.00Down
Eye15 91 of 4 0.01Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland8 30 of 4 0.00Down
Crop31 172 of 4 0.00Down
Midgut6220 1934 of 4 2.80Up
Tubule2 00 of 4 0.00Down
Hindgut12 31 of 4 0.00Down
Heart7 02 of 4 0.00Down
Fat body9 32 of 4 0.00Down
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca5 12 of 4 0.00Down
Mated spermatheca4 10 of 4 0.00Down
Adult carcass53 164 of 4 0.00Down
Larval CNS36 612 of 4 0.02Down
Larval Salivary gland2 00 of 4 0.00Down
Larval midgut5803 2714 of 4 2.57Up
Larval tubule0 00 of 4 0.00Down
Larval hindgut37 44 of 4 0.02Down
Larval fat body22 13 of 4 0.00Down
Larval trachea17 201 of 4 0.01Down
Larval carcass18 111 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly2257 3724 of 4

Looking for FBgn0036024. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime