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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036036 through 18771 annotations produced 1 hits



(CG14174):

Annotation Number : CG14174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036036
Gbrowse : chr3L:9712427-9713567 (+) // 100.0 //
Probeset : 1632139_at
Accessions : protein= NP_648351;, nucleotide= NM_140094;
FlyMine data for FBgn0036036.
VDRC has 3 RNAi stocks for FBgn0036036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 24 of 4 0.40Down
Head18 34 of 4 0.50Down
Eye9 03 of 4 0.23Down
Thoracicoabdominal ganglion17 03 of 4 0.40Down
Salivary gland29 31 of 4 0.74Down
Crop27 34 of 4 0.70Down
Midgut20 13 of 4 0.50Down
Tubule22 14 of 4 0.60Down
Hindgut18 04 of 4 0.50Down
Heart12 14 of 4 0.31Down
Fat body23 24 of 4 0.58Down
Ovary45 14 of 4 1.10Up
Testis193 54 of 4 4.80Up
Male accessory glands45 24 of 4 1.10None
Virgin spermatheca23 24 of 4 0.59Down
Mated spermatheca32 14 of 4 0.81Down
Adult carcass16 31 of 4 0.40Down
Larval CNS31 74 of 4 0.80None
Larval Salivary gland17 23 of 4 0.44Down
Larval midgut12 40 of 4 0.32Down
Larval tubule14 23 of 4 0.40Down
Larval hindgut15 04 of 4 0.39Down
Larval fat body33 84 of 4 0.80None
Larval trachea34 84 of 4 0.86None
Larval carcass25 14 of 4 0.65Down
S2 cells (growing)40 04 of 4 1.00None
Whole fly39 04 of 4

Looking for FBgn0036036. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime