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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036039 through 18771 annotations produced 1 hits



(CG18177):

Annotation Number : CG18177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036039
Gbrowse : chr3L:9720029-9722751 (+) // 100.0 //
Probeset : 1627893_at
Accessions : protein= NP_001137929; /// NP_648353; /// NP_996032;, nucleotide= NM_001144457; /// NM_140096; /// NM_206310;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0036039.
VDRC has 3 RNAi stocks for FBgn0036039 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain305 ± 84 of 4 2.00Up
Head154 ± 54 of 4 1.00None
Eye195 ± 144 of 4 1.27None
Thoracicoabdominal ganglion274 ± 64 of 4 1.80Up
Salivary gland144 ± 24 of 4 0.94None
Crop102 ± 54 of 4 0.70Down
Midgut147 ± 74 of 4 1.00None
Tubule113 ± 44 of 4 0.70Down
Hindgut100 ± 34 of 4 0.70Down
Heart58 ± 14 of 4 0.38Down
Fat body66 ± 34 of 4 0.43Down
Ovary389 ± 44 of 4 2.50Up
Testis18 ± 04 of 4 0.10Down
Male accessory glands83 ± 34 of 4 0.50Down
Virgin spermatheca72 ± 44 of 4 0.47Down
Mated spermatheca92 ± 24 of 4 0.60Down
Adult carcass86 ± 44 of 4 0.60Down
Larval CNS365 ± 94 of 4 2.38Up
Larval Salivary gland170 ± 54 of 4 1.11None
Larval midgut172 ± 74 of 4 1.12None
Larval tubule176 ± 04 of 4 1.10None
Larval hindgut147 ± 34 of 4 0.96None
Larval fat body90 ± 34 of 4 0.60Down
Larval trachea146 ± 104 of 4 0.95None
Larval carcass212 ± 114 of 4 1.38Up
S2 cells (growing)206 ± 24 of 4 1.34Up
Whole fly153 ± 94 of 4

Looking for FBgn0036039. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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