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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036043 through 18771 annotations produced 2 hits



(CG8177):

Annotation Number : CG8177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036043
Gbrowse : chr3L:9756651-9778490 (+) // 100.0 //
Probeset : 1638244_s_at
Accessions : protein= NP_001163402; /// NP_648357; /// NP_729546; /// NP_729547; /// NP_729548; /// NP_729549; /// NP_729550; /// NP_729551; /// NP_996033; /// NP_996034; /// NP_996035; /// NP_996036;, nucleotide= NM_001169931; /// NM_140100; /// NM_168369; /// NM_168370; /// NM_168371; /// NM_168372; /// NM_168373; /// NM_168374; /// NM_206311; /// NM_206312; /// NM_206313; /// NM_206314;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity
FlyMine data for FBgn0036043.
Homophila reports that CG8177 is a close match (6e-49) to human gene BTR1;CDPD;CHED2;NABC1;SLC4A11 (NP_114423), a gene associated with Corneal endothelial dystrophy 2, 217700 (3);Corneal endothelial dystrophy and perceptive deafness, 217400 (3).
BioGrid reports that CG8177 interacts with CG8942 .
VDRC has 2 RNAi stocks for FBgn0036043 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain311 144 of 4 5.20Up
Head66 64 of 4 1.10None
Eye158 154 of 4 2.66Up
Thoracicoabdominal ganglion241 154 of 4 4.00Up
Salivary gland21 50 of 4 0.36Down
Crop19 21 of 4 0.30Down
Midgut172 174 of 4 2.90Up
Tubule7 00 of 4 0.10Down
Hindgut60 44 of 4 1.00None
Heart91 134 of 4 1.53None
Fat body16 40 of 4 0.27Down
Ovary97 84 of 4 1.60Up
Testis28 24 of 4 0.50Down
Male accessory glands10 20 of 4 0.20Down
Virgin spermatheca11 20 of 4 0.19Down
Mated spermatheca22 31 of 4 0.38Down
Adult carcass29 41 of 4 0.50Down
Larval CNS43 64 of 4 0.73Down
Larval Salivary gland37 54 of 4 0.62Down
Larval midgut225 174 of 4 3.77Up
Larval tubule18 10 of 4 0.30Down
Larval hindgut236 284 of 4 3.96Up
Larval fat body13 10 of 4 0.20Down
Larval trachea70 154 of 4 1.18None
Larval carcass30 21 of 4 0.51Down
S2 cells (growing)64 64 of 4 1.09None
Whole fly59 44 of 4



(CG8177):

Annotation Number : CG8177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036043
Gbrowse : chr3L:9756651-9779365 (+) // 100.0 //
Probeset : 1633032_s_at
Accessions : protein= NP_001163402; /// NP_648357; /// NP_729546; /// NP_729547; /// NP_729548; /// NP_729549; /// NP_729550; /// NP_729551; /// NP_996033; /// NP_996034; /// NP_996035; /// NP_996036;, nucleotide= NM_001169931; /// NM_140100; /// NM_168369; /// NM_168370; /// NM_168371; /// NM_168372; /// NM_168373; /// NM_168374; /// NM_206311; /// NM_206312; /// NM_206313; /// NM_206314;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity
FlyMine data for FBgn0036043.
Homophila reports that CG8177 is a close match (6e-49) to human gene BTR1;CDPD;CHED2;NABC1;SLC4A11 (NP_114423), a gene associated with Corneal endothelial dystrophy 2, 217700 (3);Corneal endothelial dystrophy and perceptive deafness, 217400 (3).
BioGrid reports that CG8177 interacts with CG8942 .
VDRC has 2 RNAi stocks for FBgn0036043 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1108 134 of 4 4.90Up
Head305 154 of 4 1.40Up
Eye326 154 of 4 1.44Up
Thoracicoabdominal ganglion1181 174 of 4 5.20Up
Salivary gland20 50 of 4 0.09Down
Crop52 54 of 4 0.20Down
Midgut798 274 of 4 3.50Up
Tubule20 42 of 4 0.10Down
Hindgut198 164 of 4 0.90None
Heart210 214 of 4 0.93None
Fat body42 84 of 4 0.19Down
Ovary583 34 of 4 2.60Up
Testis101 44 of 4 0.40Down
Male accessory glands52 74 of 4 0.20Down
Virgin spermatheca63 44 of 4 0.28Down
Mated spermatheca89 154 of 4 0.39Down
Adult carcass53 44 of 4 0.20Down
Larval CNS218 284 of 4 0.97None
Larval Salivary gland159 84 of 4 0.70Down
Larval midgut1257 914 of 4 5.56Up
Larval tubule52 24 of 4 0.20Down
Larval hindgut1246 544 of 4 5.52Up
Larval fat body22 14 of 4 0.10Down
Larval trachea189 154 of 4 0.84Down
Larval carcass116 64 of 4 0.51Down
S2 cells (growing)139 144 of 4 0.62Down
Whole fly226 44 of 4

Looking for FBgn0036043. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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