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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036044 through 18771 annotations produced 1 hits



(CG14168):

Annotation Number : CG14168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036044
Gbrowse : chr3L:9781675-9790626 (-) // 100.0 //
Probeset : 1623867_at
Accessions : protein= NP_648358;, nucleotide= NM_140101;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0036044.
BioGrid reports that CG14168 interacts with CG15283 CG7224 CG9933 CG3979 CG4865 CG5053 CG6779 .
VDRC has 3 RNAi stocks for FBgn0036044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.00None
Head6 20 of 4 1.30None
Eye2 00 of 4 0.41None
Thoracicoabdominal ganglion8 10 of 4 1.60None
Salivary gland13 20 of 4 2.53None
Crop8 02 of 4 1.70None
Midgut4 10 of 4 0.80None
Tubule8 01 of 4 1.70Up
Hindgut3 10 of 4 0.70None
Heart3 20 of 4 0.64None
Fat body4 21 of 4 0.90None
Ovary4 10 of 4 0.80None
Testis4 00 of 4 0.80None
Male accessory glands9 10 of 4 1.90None
Virgin spermatheca5 11 of 4 1.05None
Mated spermatheca7 00 of 4 1.38None
Adult carcass18 22 of 4 3.50Up
Larval CNS4 11 of 4 0.91None
Larval Salivary gland6 11 of 4 1.27None
Larval midgut5 20 of 4 1.12None
Larval tubule3 00 of 4 0.70None
Larval hindgut5 10 of 4 0.98None
Larval fat body9 31 of 4 1.80None
Larval trachea1 10 of 4 0.31None
Larval carcass7 01 of 4 1.37None
S2 cells (growing)4 01 of 4 0.84None
Whole fly5 10 of 4

Looking for FBgn0036044. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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