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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036052 through 18771 annotations produced 1 hits



(CG10809):

Annotation Number : CG10809
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036052
Gbrowse : chr3L:9850694-9852941 (-) // 100.0 //
Probeset : 1637107_at
Accessions : protein= NP_001163403; /// NP_648365;, nucleotide= NM_001169932; /// NM_140108;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036052.
BioGrid reports that CG10809 interacts with CG3820 CG7360 .
VDRC has 3 RNAi stocks for FBgn0036052 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 24 of 4 1.50Up
Head61 34 of 4 0.60Down
Eye51 44 of 4 0.54Down
Thoracicoabdominal ganglion90 74 of 4 1.00None
Salivary gland101 44 of 4 1.07None
Crop73 24 of 4 0.80Down
Midgut75 34 of 4 0.80Down
Tubule39 14 of 4 0.40Down
Hindgut74 14 of 4 0.80Down
Heart41 34 of 4 0.43Down
Fat body59 74 of 4 0.62Down
Ovary158 34 of 4 1.70Up
Testis262 84 of 4 2.80Up
Male accessory glands79 34 of 4 0.80Down
Virgin spermatheca61 34 of 4 0.64Down
Mated spermatheca57 34 of 4 0.60Down
Adult carcass46 34 of 4 0.50Down
Larval CNS181 24 of 4 1.91Up
Larval Salivary gland79 34 of 4 0.83Down
Larval midgut73 54 of 4 0.77Down
Larval tubule75 14 of 4 0.80Down
Larval hindgut77 14 of 4 0.82Down
Larval fat body110 164 of 4 1.20None
Larval trachea98 54 of 4 1.04None
Larval carcass71 34 of 4 0.75Down
S2 cells (growing)125 24 of 4 1.33Up
Whole fly94 44 of 4

Looking for FBgn0036052. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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