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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036056 through 18771 annotations produced 2 hits



/// (CG14164 /// CG6709):

Annotation Number : CG14164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036056 /// FBgn0036057
Gbrowse : chr3L:9887091-9887770 (-) // 100.0 //
Probeset : 1640073_at
Accessions : protein= NP_001097566; /// NP_001097567; /// NP_648370; /// NP_648371;, nucleotide= NM_001104096; /// NM_001104097; /// NM_140113; /// NM_140114;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036056 /// FBgn0036057.
BioGrid reports that CG14164 interacts with CG14641 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 1.40Up
Head3 10 of 4 0.20Down
Eye6 10 of 4 0.47Down
Thoracicoabdominal ganglion10 10 of 4 0.70None
Salivary gland1 00 of 4 0.12Down
Crop3 00 of 4 0.30Down
Midgut1 00 of 4 0.10Down
Tubule6 00 of 4 0.50Down
Hindgut0 00 of 4 0.10Down
Heart4 10 of 4 0.30Down
Fat body1 00 of 4 0.12Down
Ovary1 10 of 4 0.10Down
Testis183 44 of 413.70Up
Male accessory glands65 64 of 4 4.90Up
Virgin spermatheca1 10 of 4 0.14Down
Mated spermatheca0 00 of 4 0.07Down
Adult carcass1 00 of 4 0.10Down
Larval CNS6 30 of 4 0.51Down
Larval Salivary gland6 20 of 4 0.48Down
Larval midgut1 00 of 4 0.11Down
Larval tubule6 10 of 4 0.50Down
Larval hindgut3 00 of 4 0.25Down
Larval fat body38 123 of 4 2.90None
Larval trachea11 53 of 4 0.84None
Larval carcass17 30 of 4 1.31None
S2 cells (growing)52 54 of 4 3.91Up
Whole fly13 12 of 4



/// (CG14164 /// CG6709):

Annotation Number : CG6709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036056 /// FBgn0036057
Gbrowse : chr3L:9886419-9886990 (-) // 100.0 //
Probeset : 1627055_at
Accessions : protein= NP_001097566; /// NP_001097567; /// NP_648370; /// NP_648371;, nucleotide= NM_001104096; /// NM_001104097; /// NM_140113; /// NM_140114;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036056 /// FBgn0036057.
BioGrid reports that CG6709 interacts with CG8384 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 24 of 4 0.70Down
Head15 13 of 4 0.20Down
Eye17 14 of 4 0.29Down
Thoracicoabdominal ganglion36 24 of 4 0.60Down
Salivary gland102 44 of 4 1.68Up
Crop77 24 of 4 1.30Up
Midgut14 20 of 4 0.20Down
Tubule35 04 of 4 0.60Down
Hindgut15 21 of 4 0.30Down
Heart8 12 of 4 0.13Down
Fat body5 30 of 4 0.08Down
Ovary2 00 of 4 0.00Down
Testis693 144 of 411.30Up
Male accessory glands130 154 of 4 2.10Up
Virgin spermatheca6 10 of 4 0.11Down
Mated spermatheca7 20 of 4 0.12Down
Adult carcass7 30 of 4 0.10Down
Larval CNS23 14 of 4 0.38Down
Larval Salivary gland10 31 of 4 0.17Down
Larval midgut26 31 of 4 0.43Down
Larval tubule29 23 of 4 0.50Down
Larval hindgut25 11 of 4 0.41Down
Larval fat body122 294 of 4 2.00None
Larval trachea14 22 of 4 0.24Down
Larval carcass24 33 of 4 0.41Down
S2 cells (growing)43 24 of 4 0.71Down
Whole fly61 24 of 4

Looking for FBgn0036056. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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