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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036059 through 18771 annotations produced 1 hits



nudE (nudE):

Annotation Number : CG8104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036059
Gbrowse : chr3L:9892328-9896066 (+) // 100.0 //
Probeset : 1638520_at
Accessions : protein= NP_001097568; /// NP_001097569; /// NP_001137930; /// NP_648373;, nucleotide= NM_001104098; /// NM_001104099; /// NM_001144458; /// NM_140116;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0005635 // nuclear envelope // inferred from direct assay /// 0
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from seq
FlyMine data for FBgn0036059.
BDGP gene expression has embryonic in situ data for CG8104: 23 pix of staining in 4 body parts.
BioGrid reports that CG8104 interacts with CG8301 CG8942 .
TRiP has 2 RNAi stocks for FBgn0036059 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain459 64 of 4 2.10Up
Head324 184 of 4 1.50Up
Eye282 104 of 4 1.30Up
Thoracicoabdominal ganglion416 114 of 4 1.90Up
Salivary gland348 194 of 4 1.60Up
Crop645 214 of 4 3.00Up
Midgut238 24 of 4 1.10None
Tubule290 154 of 4 1.30Up
Hindgut407 74 of 4 1.90Up
Heart234 164 of 4 1.08None
Fat body242 194 of 4 1.11None
Ovary453 84 of 4 2.10Up
Testis78 24 of 4 0.40Down
Male accessory glands191 74 of 4 0.90None
Virgin spermatheca243 144 of 4 1.12None
Mated spermatheca255 304 of 4 1.17None
Adult carcass287 134 of 4 1.30Up
Larval CNS372 254 of 4 1.71Up
Larval Salivary gland147 104 of 4 0.68Down
Larval midgut454 194 of 4 2.09Up
Larval tubule496 204 of 4 2.30Up
Larval hindgut592 304 of 4 2.72Up
Larval fat body162 84 of 4 0.70Down
Larval trachea388 614 of 4 1.78Up
Larval carcass354 214 of 4 1.63Up
S2 cells (growing)371 64 of 4 1.71Up
Whole fly217 74 of 4

Looking for FBgn0036059. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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