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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036066 through 18771 annotations produced 1 hits



(CG14160):

Annotation Number : CG14160
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036066
Gbrowse : chr3L:10080241-10082229 (-) // 100.0 //
Probeset : 1634607_at
Accessions : protein= NP_001097571; /// NP_648380;, nucleotide= NM_001104101; /// NM_140123;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0036066.
VDRC has 3 RNAi stocks for FBgn0036066 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.30Down
Head8 ± 11 of 4 0.60None
Eye5 ± 00 of 4 0.44Down
Thoracicoabdominal ganglion9 ± 22 of 4 0.70None
Salivary gland17 ± 30 of 4 1.31None
Crop7 ± 10 of 4 0.60None
Midgut160 ± 34 of 412.10Up
Tubule54 ± 24 of 4 4.10Up
Hindgut16 ± 14 of 4 1.30None
Heart5 ± 00 of 4 0.45Down
Fat body10 ± 42 of 4 0.77None
Ovary6 ± 01 of 4 0.50None
Testis11 ± 14 of 4 0.90None
Male accessory glands7 ± 11 of 4 0.60None
Virgin spermatheca5 ± 20 of 4 0.38Down
Mated spermatheca6 ± 11 of 4 0.48Down
Adult carcass9 ± 30 of 4 0.70None
Larval CNS4 ± 20 of 4 0.33Down
Larval Salivary gland9 ± 12 of 4 0.72None
Larval midgut66 ± 64 of 4 4.98Up
Larval tubule19 ± 14 of 4 1.40None
Larval hindgut20 ± 14 of 4 1.57Up
Larval fat body10 ± 01 of 4 0.80None
Larval trachea5 ± 10 of 4 0.42Down
Larval carcass8 ± 10 of 4 0.63None
S2 cells (growing)8 ± 11 of 4 0.66None
Whole fly13 ± 22 of 4

Looking for FBgn0036066. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime