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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036083 through 18771 annotations produced 1 hits



CG12303 (Ir67b):

Annotation Number : CG12303
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036083
Gbrowse : chr3L:10422788-10425083 (-) // 100.0 //
Probeset : 1634643_at
Accessions : protein= NP_648393;, nucleotide= NM_140136;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0036083.
VDRC has 2 RNAi stocks for FBgn0036083 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 2.20None
Head3 10 of 4 1.90None
Eye4 10 of 4 2.16None
Thoracicoabdominal ganglion4 10 of 4 2.30None
Salivary gland13 60 of 4 7.53None
Crop8 41 of 4 4.50None
Midgut5 20 of 4 3.20None
Tubule8 10 of 4 4.70Up
Hindgut7 20 of 4 4.00None
Heart2 00 of 4 1.31None
Fat body9 61 of 4 5.07None
Ovary4 10 of 4 2.40None
Testis2 10 of 4 1.30None
Male accessory glands6 20 of 4 3.30None
Virgin spermatheca10 10 of 4 5.70Up
Mated spermatheca11 30 of 4 6.03None
Adult carcass4 00 of 4 2.50None
Larval CNS3 10 of 4 1.64None
Larval Salivary gland10 22 of 4 5.65Up
Larval midgut8 20 of 4 4.34None
Larval tubule3 10 of 4 1.90None
Larval hindgut3 10 of 4 2.04None
Larval fat body9 30 of 4 5.20None
Larval trachea4 10 of 4 2.50None
Larval carcass2 00 of 4 1.61None
S2 cells (growing)4 10 of 4 2.26None
Whole fly1 00 of 4

Looking for FBgn0036083. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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