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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036090 through 18771 annotations produced 1 hits



(CG8009):

Annotation Number : CG8009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036090
Gbrowse : chr3L:10631252-10632731 (+) // 100.0 //
Probeset : 1636246_a_at
Accessions : protein= NP_648400; /// NP_729617;, nucleotide= NM_140143; /// NM_168415;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0036090.
VDRC has 4 RNAi stocks for FBgn0036090 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain249 ± 54 of 4 1.50Up
Head174 ± 64 of 4 1.10None
Eye314 ± 194 of 4 1.91Up
Thoracicoabdominal ganglion219 ± 34 of 4 1.30Up
Salivary gland174 ± 124 of 4 1.06None
Crop220 ± 74 of 4 1.30Up
Midgut260 ± 94 of 4 1.60Up
Tubule79 ± 14 of 4 0.50Down
Hindgut154 ± 14 of 4 0.90None
Heart172 ± 44 of 4 1.05None
Fat body162 ± 184 of 4 0.99None
Ovary323 ± 34 of 4 2.00Up
Testis188 ± 44 of 4 1.10Up
Male accessory glands223 ± 124 of 4 1.40Up
Virgin spermatheca152 ± 34 of 4 0.92None
Mated spermatheca166 ± 104 of 4 1.01None
Adult carcass156 ± 64 of 4 0.90None
Larval CNS231 ± 124 of 4 1.40Up
Larval Salivary gland192 ± 34 of 4 1.17Up
Larval midgut197 ± 94 of 4 1.20Up
Larval tubule140 ± 34 of 4 0.90Down
Larval hindgut120 ± 74 of 4 0.73Down
Larval fat body208 ± 84 of 4 1.30Up
Larval trachea152 ± 44 of 4 0.93None
Larval carcass128 ± 64 of 4 0.78Down
S2 cells (growing)152 ± 34 of 4 0.92None
Whole fly164 ± 54 of 4

Looking for FBgn0036090. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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