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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036091 through 18771 annotations produced 1 hits



(CG18628):

Annotation Number : CG18628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036091
Gbrowse : chr3L:10632870-10633249 (+) // 100.0 //
Probeset : 1629834_at
Accessions : protein= NP_648401;, nucleotide= NM_140144;
FlyMine data for FBgn0036091.
BioGrid reports that CG18628 interacts with CG6843 .
VDRC has 3 RNAi stocks for FBgn0036091 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 04 of 4 0.00Down
Head13 ± 14 of 4 0.00Down
Eye9 ± 22 of 4 0.00Down
Thoracicoabdominal ganglion31 ± 24 of 4 0.00Down
Salivary gland14 ± 91 of 4 0.00Down
Crop6 ± 01 of 4 0.00Down
Midgut11 ± 01 of 4 0.00Down
Tubule20 ± 150 of 4 0.00Down
Hindgut15 ± 62 of 4 0.00Down
Heart27 ± 44 of 4 0.01Down
Fat body10 ± 62 of 4 0.00Down
Ovary303 ± 554 of 4 0.10Down
Testis4084 ± 3294 of 4 1.10None
Male accessory glands956 ± 5994 of 4 0.30Down
Virgin spermatheca596 ± 3854 of 4 0.16Down
Mated spermatheca179 ± 644 of 4 0.05Down
Adult carcass277 ± 1164 of 4 0.10Down
Larval CNS5 ± 12 of 4 0.00Down
Larval Salivary gland3 ± 00 of 4 0.00Down
Larval midgut46 ± 44 of 4 0.01Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut13 ± 42 of 4 0.00Down
Larval fat body11 ± 00 of 4 0.00Down
Larval trachea176 ± 3112 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly3747 ± 2574 of 4

Looking for FBgn0036091. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime