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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036099 through 18771 annotations produced 1 hits



(CG11811):

Annotation Number : CG11811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036099
Gbrowse : chr3L:10684116-10685701 (+) // 100.0 //
Probeset : 1640421_at
Accessions : protein= NP_648408;, nucleotide= NM_140151;
Interpro : 0004385 // guanylate kinase activity // inferred from sequence or structural similarity /// 0004385 // guanylate kinase
FlyMine data for FBgn0036099.
BDGP gene expression has embryonic in situ data for CG11811: 12 pix of staining in 11 body parts.
Homophila reports that CG11811 is a close match (4e-18) to human gene CASK;MICPCH (NP_003679), a gene associated with Mental retardation and microcephaly with pontine and cerebellar hypoplasia, 300749 (3).
BioGrid reports that CG11811 interacts with CG15236 CG33522 .
TRiP has 1 RNAi stocks for FBgn0036099 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 54 of 4 0.70Down
Head148 134 of 4 0.70Down
Eye130 44 of 4 0.61Down
Thoracicoabdominal ganglion141 54 of 4 0.70Down
Salivary gland151 94 of 4 0.71Down
Crop276 74 of 4 1.30Up
Midgut117 64 of 4 0.60Down
Tubule127 64 of 4 0.60Down
Hindgut137 44 of 4 0.60Down
Heart156 44 of 4 0.74Down
Fat body251 74 of 4 1.18Up
Ovary541 104 of 4 2.50Up
Testis65 44 of 4 0.30Down
Male accessory glands119 74 of 4 0.60Down
Virgin spermatheca122 64 of 4 0.58Down
Mated spermatheca148 94 of 4 0.70Down
Adult carcass158 84 of 4 0.70Down
Larval CNS397 204 of 4 1.87Up
Larval Salivary gland441 454 of 4 2.07Up
Larval midgut215 74 of 4 1.01None
Larval tubule192 44 of 4 0.90Down
Larval hindgut318 124 of 4 1.50Up
Larval fat body384 534 of 4 1.80Up
Larval trachea367 424 of 4 1.73Up
Larval carcass509 754 of 4 2.39Up
S2 cells (growing)241 44 of 4 1.14Up
Whole fly212 54 of 4

Looking for FBgn0036099. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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