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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036104 through 18771 annotations produced 1 hits



(CG6418):

Annotation Number : CG6418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036104
Gbrowse : chr3L:10869363-10872135 (-) // 100.0 //
Probeset : 1637497_at
Accessions : protein= NP_648413;, nucleotide= NM_140156;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0036104.
BDGP gene expression has embryonic in situ data for CG6418: 15 pix of staining in 8 body parts.
BioGrid reports that CG6418 interacts with CG9998 CG8092 .
TRiP has 2 RNAi stocks for FBgn0036104 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 ± 54 of 4 2.00Up
Head160 ± 44 of 4 1.10None
Eye194 ± 74 of 4 1.28Up
Thoracicoabdominal ganglion249 ± 134 of 4 1.60Up
Salivary gland131 ± 74 of 4 0.86None
Crop87 ± 54 of 4 0.60Down
Midgut139 ± 124 of 4 0.90None
Tubule89 ± 44 of 4 0.60Down
Hindgut154 ± 54 of 4 1.00None
Heart77 ± 34 of 4 0.51Down
Fat body104 ± 64 of 4 0.69Down
Ovary280 ± 74 of 4 1.80Up
Testis71 ± 44 of 4 0.50Down
Male accessory glands263 ± 164 of 4 1.70Up
Virgin spermatheca94 ± 24 of 4 0.62Down
Mated spermatheca99 ± 44 of 4 0.65Down
Adult carcass72 ± 44 of 4 0.50Down
Larval CNS416 ± 154 of 4 2.74Up
Larval Salivary gland170 ± 104 of 4 1.13None
Larval midgut100 ± 84 of 4 0.66Down
Larval tubule91 ± 34 of 4 0.60Down
Larval hindgut174 ± 74 of 4 1.15None
Larval fat body67 ± 44 of 4 0.40Down
Larval trachea133 ± 64 of 4 0.88Down
Larval carcass106 ± 24 of 4 0.70Down
S2 cells (growing)217 ± 84 of 4 1.43Up
Whole fly151 ± 44 of 4

Looking for FBgn0036104. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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