FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036106 through 18771 annotations produced 1 hits

(CG6409):

Annotation Number : CG6409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036106
Gbrowse : chr3L:10873798-10875151 (-) // 99.59 //
Probeset : 1634278_at
Accessions : protein= NP_648415;, nucleotide= NM_140158;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity
FlyMine data for FBgn0036106.
BDGP gene expression has embryonic in situ data for CG6409: 20 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0036106 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	43 ± 3	4 of 4	0.00	Down
Head	3666 ± 140	4 of 4	2.60	Up
Eye	1384 ± 223	4 of 4	0.98	None
Thoracicoabdominal ganglion	69 ± 28	4 of 4	0.00	Down
Salivary gland	25 ± 12	2 of 4	0.02	Down
Crop	19 ± 3	3 of 4	0.00	Down
Midgut	28 ± 11	2 of 4	0.00	Down
Tubule	182 ± 155	1 of 4	0.10	Down
Hindgut	6879 ± 233	4 of 4	4.90	Up
Heart	171 ± 5	4 of 4	0.12	Down
Fat body	130 ± 44	4 of 4	0.09	Down
Ovary	4 ± 1	0 of 4	0.00	Down
Testis	299 ± 16	4 of 4	0.20	Down
Male accessory glands	433 ± 47	4 of 4	0.30	Down
Virgin spermatheca	47 ± 12	4 of 4	0.03	Down
Mated spermatheca	54 ± 9	4 of 4	0.04	Down
Adult carcass	4538 ± 126	4 of 4	3.20	Up
Larval CNS	2 ± 1	0 of 4	0.00	Down
Larval Salivary gland	5 ± 1	0 of 4	0.00	Down
Larval midgut	34 ± 9	4 of 4	0.02	Down
Larval tubule	25 ± 20	1 of 4	0.00	Down
Larval hindgut	4944 ± 110	4 of 4	3.50	Up
Larval fat body	24 ± 20	1 of 4	0.00	Down
Larval trachea	46 ± 36	4 of 4	0.03	Down
Larval carcass	323 ± 46	4 of 4	0.23	Down
S2 cells (growing)	3 ± 0	0 of 4	0.00	Down
Whole fly	1411 ± 82	4 of 4

Looking for FBgn0036106. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720