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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036107 through 18771 annotations produced 1 hits



(CG7949):

Annotation Number : CG7949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036107
Gbrowse : chr3L:10876062-10876588 (+) // 100.0 //
Probeset : 1633886_at
Accessions : protein= NP_648416;, nucleotide= NM_140159;
FlyMine data for FBgn0036107.
BioGrid reports that CG7949 interacts with CG8357 .
VDRC has 3 RNAi stocks for FBgn0036107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain241 84 of 4 1.40Up
Head211 164 of 4 1.20None
Eye223 44 of 4 1.27Up
Thoracicoabdominal ganglion297 94 of 4 1.70Up
Salivary gland205 134 of 4 1.17None
Crop209 44 of 4 1.20None
Midgut188 44 of 4 1.10None
Tubule86 14 of 4 0.50Down
Hindgut162 64 of 4 0.90None
Heart160 84 of 4 0.91None
Fat body156 64 of 4 0.89None
Ovary361 54 of 4 2.00Up
Testis80 24 of 4 0.50Down
Male accessory glands345 174 of 4 2.00Up
Virgin spermatheca119 54 of 4 0.68Down
Mated spermatheca123 84 of 4 0.70Down
Adult carcass212 214 of 4 1.20None
Larval CNS214 124 of 4 1.22None
Larval Salivary gland230 44 of 4 1.31Up
Larval midgut129 24 of 4 0.74Down
Larval tubule325 104 of 4 1.80Up
Larval hindgut160 94 of 4 0.91None
Larval fat body139 164 of 4 0.80None
Larval trachea214 224 of 4 1.22None
Larval carcass194 114 of 4 1.10None
S2 cells (growing)199 44 of 4 1.13None
Whole fly176 134 of 4

Looking for FBgn0036107. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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