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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036111 through 18771 annotations produced 1 hits



Aps (Aps):

Annotation Number : CG6391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036111
Gbrowse : chr3L:10888546-10892247 (-) // 100.0 //
Probeset : 1640329_s_at
Accessions : protein= NP_648421; /// NP_729639; /// NP_729640;, nucleotide= NM_140164; /// NM_168425; /// NM_168426;
Interpro : 0008486 // diphosphoinositol-polyphosphate diphosphatase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0036111.
BDGP gene expression has embryonic in situ data for CG6391: 12 pix of staining in 14 body parts.
VDRC has 4 RNAi stocks for FBgn0036111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 ± 134 of 4 0.90None
Head315 ± 124 of 4 0.70Down
Eye402 ± 374 of 4 0.92None
Thoracicoabdominal ganglion395 ± 184 of 4 0.90None
Salivary gland334 ± 274 of 4 0.76Down
Crop508 ± 234 of 4 1.20None
Midgut255 ± 154 of 4 0.60Down
Tubule456 ± 174 of 4 1.00None
Hindgut351 ± 104 of 4 0.80Down
Heart216 ± 154 of 4 0.49Down
Fat body301 ± 494 of 4 0.69Down
Ovary857 ± 214 of 4 1.90Up
Testis290 ± 144 of 4 0.70Down
Male accessory glands507 ± 144 of 4 1.20Up
Virgin spermatheca218 ± 114 of 4 0.50Down
Mated spermatheca220 ± 134 of 4 0.50Down
Adult carcass214 ± 244 of 4 0.50Down
Larval CNS627 ± 684 of 4 1.43Up
Larval Salivary gland303 ± 94 of 4 0.69Down
Larval midgut320 ± 124 of 4 0.73Down
Larval tubule403 ± 144 of 4 0.90None
Larval hindgut373 ± 274 of 4 0.85None
Larval fat body328 ± 204 of 4 0.70Down
Larval trachea441 ± 324 of 4 1.00None
Larval carcass343 ± 144 of 4 0.78Down
S2 cells (growing)443 ± 124 of 4 1.01None
Whole fly440 ± 204 of 4

Looking for FBgn0036111. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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