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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036118 through 18771 annotations produced 1 hits



BLOC-1 subunit 2 (blos2):

Annotation Number : CG14145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036118
Gbrowse : chr3L:11054738-11055218 (+) // 100.0 //
Probeset : 1628249_at
Accessions : protein= NP_648427;, nucleotide= NM_140170;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036118.
BioGrid reports that CG14145 interacts with CG14164 CG1669 CG17570 CG18349 CG2095 CG5441 CG8736 CG14145 CG14556 CG15152 CG18528 CG1913 CG30428 CG32369 CG3726 CG4303 CG6033 CG8669 CG8907 CG9834 CG9951 .
VDRC has 1 RNAi stocks for FBgn0036118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 ± 24 of 4 1.40Up
Head79 ± 44 of 4 1.20None
Eye162 ± 74 of 4 2.46Up
Thoracicoabdominal ganglion116 ± 44 of 4 1.80Up
Salivary gland143 ± 134 of 4 2.18Up
Crop98 ± 24 of 4 1.50Up
Midgut84 ± 44 of 4 1.30Up
Tubule32 ± 14 of 4 0.50Down
Hindgut89 ± 34 of 4 1.40Up
Heart103 ± 74 of 4 1.57Up
Fat body92 ± 64 of 4 1.40Up
Ovary104 ± 14 of 4 1.60Up
Testis22 ± 24 of 4 0.30Down
Male accessory glands173 ± 124 of 4 2.60Up
Virgin spermatheca60 ± 24 of 4 0.91None
Mated spermatheca54 ± 24 of 4 0.83None
Adult carcass92 ± 24 of 4 1.40Up
Larval CNS86 ± 34 of 4 1.32Up
Larval Salivary gland145 ± 104 of 4 2.20Up
Larval midgut99 ± 84 of 4 1.51Up
Larval tubule145 ± 34 of 4 2.20Up
Larval hindgut85 ± 34 of 4 1.29Up
Larval fat body100 ± 74 of 4 1.50Up
Larval trachea87 ± 144 of 4 1.33None
Larval carcass68 ± 24 of 4 1.04None
S2 cells (growing)84 ± 24 of 4 1.27Up
Whole fly66 ± 54 of 4

Looking for FBgn0036118. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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