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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036124 through 18771 annotations produced 1 hits



anon-fast-evolving-2H6 (CG7839):

Annotation Number : CG7839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036124
Gbrowse : chr3L:11067870-11071836 (+) // 100.0 //
Probeset : 1636346_at
Accessions : protein= NP_648431;, nucleotide= NM_140174;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0036124.
BDGP gene expression has embryonic in situ data for CG7839: 13 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0036124 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036124 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 34 of 4 0.40Down
Head41 ± 34 of 4 0.40Down
Eye42 ± 24 of 4 0.40Down
Thoracicoabdominal ganglion41 ± 54 of 4 0.40Down
Salivary gland58 ± 44 of 4 0.55Down
Crop59 ± 44 of 4 0.60Down
Midgut47 ± 11 of 4 0.40Down
Tubule50 ± 84 of 4 0.50Down
Hindgut36 ± 24 of 4 0.30Down
Heart47 ± 24 of 4 0.45Down
Fat body63 ± 34 of 4 0.60Down
Ovary290 ± 54 of 4 2.70Up
Testis31 ± 14 of 4 0.30Down
Male accessory glands136 ± 124 of 4 1.30None
Virgin spermatheca65 ± 24 of 4 0.62Down
Mated spermatheca95 ± 14 of 4 0.90None
Adult carcass37 ± 24 of 4 0.30Down
Larval CNS117 ± 114 of 4 1.11None
Larval Salivary gland100 ± 44 of 4 0.95None
Larval midgut42 ± 61 of 4 0.40Down
Larval tubule20 ± 14 of 4 0.20Down
Larval hindgut52 ± 74 of 4 0.50Down
Larval fat body27 ± 13 of 4 0.30Down
Larval trachea128 ± 164 of 4 1.21None
Larval carcass87 ± 164 of 4 0.82None
S2 cells (growing)86 ± 64 of 4 0.81None
Whole fly106 ± 74 of 4

Looking for FBgn0036124. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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