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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036126 through 18771 annotations produced 1 hits


Annotation Number : CG6272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036126
Gbrowse : chr3L:11090608-11091286 (-) // 100.0 //
Probeset : 1628683_at
Accessions : protein= NP_648434;, nucleotide= NM_140177;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0036126.
BDGP gene expression has embryonic in situ data for CG6272: 4 pix of staining in 1 body parts.
TRiP has 2 RNAi stocks for FBgn0036126 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036126 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 24 of 4 1.60Up
Head181 14 of 4 1.70Up
Eye310 104 of 4 2.97Up
Thoracicoabdominal ganglion163 84 of 4 1.60Up
Salivary gland261 134 of 4 2.49Up
Crop218 54 of 4 2.10Up
Midgut105 44 of 4 1.00None
Tubule165 134 of 4 1.60Up
Hindgut175 94 of 4 1.70Up
Heart223 74 of 4 2.13Up
Fat body140 194 of 4 1.34Up
Ovary113 14 of 4 1.10None
Testis28 14 of 4 0.30Down
Male accessory glands162 54 of 4 1.50Up
Virgin spermatheca116 94 of 4 1.11None
Mated spermatheca118 44 of 4 1.13None
Adult carcass148 44 of 4 1.40Up
Larval CNS137 74 of 4 1.32Up
Larval Salivary gland148 134 of 4 1.41Up
Larval midgut111 24 of 4 1.06None
Larval tubule264 74 of 4 2.50Up
Larval hindgut204 54 of 4 1.95Up
Larval fat body139 194 of 4 1.30None
Larval trachea245 74 of 4 2.34Up
Larval carcass174 104 of 4 1.66Up
S2 cells (growing)318 134 of 4 3.04Up
Whole fly104 44 of 4

Looking for FBgn0036126. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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