FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036128 through 18771 annotations produced 1 hits

CG11801 (Elo68beta):

Annotation Number : CG11801
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036128
Gbrowse : chr3L:11093781-11094775 (-) // 100.0 //
Probeset : 1629371_at
Accessions : protein= NP_001097580; /// NP_001097581;, nucleotide= NM_001104110; /// NM_001104111;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0036128.
Homophila reports that CG11801 is a close match (4e-38) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 3 RNAi stocks for FBgn0036128 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	1 of 4	0.70	None
Head	2 ± 0	0 of 4	0.40	Down
Eye	4 ± 1	0 of 4	0.74	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.50	None
Salivary gland	11 ± 2	0 of 4	2.06	None
Crop	4 ± 1	1 of 4	0.70	None
Midgut	6 ± 1	0 of 4	1.20	None
Tubule	5 ± 1	1 of 4	1.00	None
Hindgut	5 ± 1	2 of 4	1.00	None
Heart	3 ± 1	1 of 4	0.60	None
Fat body	8 ± 0	2 of 4	1.48	None
Ovary	2 ± 0	1 of 4	0.40	Down
Testis	4 ± 0	0 of 4	0.70	None
Male accessory glands	10 ± 3	1 of 4	1.80	None
Virgin spermatheca	7 ± 0	3 of 4	1.41	None
Mated spermatheca	7 ± 1	1 of 4	1.35	None
Adult carcass	10 ± 1	2 of 4	1.90	Up
Larval CNS	2 ± 2	1 of 4	0.52	None
Larval Salivary gland	12 ± 2	1 of 4	2.17	Up
Larval midgut	6 ± 1	0 of 4	1.12	None
Larval tubule	5 ± 0	0 of 4	1.00	None
Larval hindgut	4 ± 1	1 of 4	0.84	None
Larval fat body	9 ± 2	1 of 4	1.80	None
Larval trachea	190 ± 88	4 of 4	34.43	Up
Larval carcass	4 ± 1	1 of 4	0.81	None
S2 cells (growing)	2 ± 0	0 of 4	0.54	None
Whole fly	5 ± 1	2 of 4

Looking for FBgn0036128. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720