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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036131 through 18771 annotations produced 1 hits


Annotation Number : CG12522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036131
Gbrowse : chr3L:11101362-11101776 (+) // 100.0 //
Probeset : 1639336_at
Accessions : protein= NP_648438;, nucleotide= NM_140181;
FlyMine data for FBgn0036131.
VDRC has 2 RNAi stocks for FBgn0036131 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.80None
Head1 00 of 4 1.80None
Eye0 00 of 4 0.74None
Thoracicoabdominal ganglion1 00 of 4 1.50None
Salivary gland7 30 of 4 9.03None
Crop3 10 of 4 4.10None
Midgut2 10 of 4 2.70None
Tubule2 00 of 4 2.40None
Hindgut1 00 of 4 1.50None
Heart0 00 of 4 0.47None
Fat body3 10 of 4 4.12None
Ovary2 10 of 4 2.80None
Testis8 21 of 4 9.80Up
Male accessory glands2 10 of 4 3.30None
Virgin spermatheca4 10 of 4 4.97None
Mated spermatheca2 00 of 4 2.35Up
Adult carcass4 20 of 4 5.30None
Larval CNS1 00 of 4 2.06None
Larval Salivary gland54 163 of 464.29Up
Larval midgut5 20 of 4 6.47None
Larval tubule0 00 of 4 0.90None
Larval hindgut2 00 of 4 2.38None
Larval fat body8 20 of 410.10Up
Larval trachea1 10 of 4 2.18None
Larval carcass5 10 of 4 6.00None
S2 cells (growing)1 00 of 4 1.97None
Whole fly0 00 of 4

Looking for FBgn0036131. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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