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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036133 through 18771 annotations produced 1 hits



(CG7638):

Annotation Number : CG7638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036133
Gbrowse : chr3L:11102791-11105217 (+) // 100.0 //
Probeset : 1635329_at
Accessions : protein= NP_648439;, nucleotide= NM_140182;
FlyMine data for FBgn0036133.
BDGP gene expression has embryonic in situ data for CG7638: 13 pix of staining in 33 body parts.
BioGrid reports that CG7638 interacts with Dmel CG32885 .
VDRC has 2 RNAi stocks for FBgn0036133 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 ± 104 of 4 1.50Up
Head136 ± 44 of 4 0.70Down
Eye124 ± 94 of 4 0.68Down
Thoracicoabdominal ganglion256 ± 44 of 4 1.40Up
Salivary gland82 ± 64 of 4 0.45Down
Crop148 ± 44 of 4 0.80Down
Midgut86 ± 74 of 4 0.50Down
Tubule182 ± 34 of 4 1.00None
Hindgut134 ± 24 of 4 0.70Down
Heart166 ± 84 of 4 0.91None
Fat body174 ± 144 of 4 0.95None
Ovary369 ± 84 of 4 2.00Up
Testis137 ± 54 of 4 0.80Down
Male accessory glands124 ± 34 of 4 0.70Down
Virgin spermatheca116 ± 74 of 4 0.63Down
Mated spermatheca129 ± 124 of 4 0.70Down
Adult carcass136 ± 84 of 4 0.70Down
Larval CNS298 ± 254 of 4 1.63Up
Larval Salivary gland263 ± 124 of 4 1.44Up
Larval midgut102 ± 34 of 4 0.56Down
Larval tubule272 ± 64 of 4 1.50Up
Larval hindgut228 ± 114 of 4 1.25Up
Larval fat body156 ± 74 of 4 0.90None
Larval trachea190 ± 214 of 4 1.04None
Larval carcass256 ± 214 of 4 1.40Up
S2 cells (growing)349 ± 34 of 4 1.91Up
Whole fly183 ± 104 of 4

Looking for FBgn0036133. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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