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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036134 through 18771 annotations produced 1 hits



Mnf (fd68A):

Annotation Number : CG11799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036134
Gbrowse : chr3L:11107393-11113875 (-) // 100.0 //
Probeset : 1634587_s_at
Accessions : protein= NP_648440; /// NP_729672; /// NP_729673; /// NP_729674; /// NP_729675;, nucleotide= NM_140183; /// NM_168443; /// NM_168444; /// NM_168445; /// NM_168446;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0036134.
BDGP gene expression has embryonic in situ data for CG11799: 6 pix of staining in 1 body parts.
Homophila reports that CG11799 is a close match (2e-12) to human gene CAGH44;FOXP2;SPCH1;TNRC10 (NP_683696), a gene associated with Speech-language disorder-1, 602081 (3).
BioGrid reports that CG11799 interacts with CG13030 CG14220 CG3016 CG3838 CG8301 CG15865 CG17332 CG4432 CG9871 CG33197 .
TRiP has 1 RNAi stocks for FBgn0036134 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain563 254 of 4 2.70Up
Head190 114 of 4 0.90None
Eye266 134 of 4 1.30Up
Thoracicoabdominal ganglion431 264 of 4 2.10Up
Salivary gland370 304 of 4 1.81Up
Crop254 84 of 4 1.20Up
Midgut100 44 of 4 0.50Down
Tubule160 54 of 4 0.80Down
Hindgut230 104 of 4 1.10None
Heart172 134 of 4 0.84None
Fat body124 204 of 4 0.60Down
Ovary386 34 of 4 1.90Up
Testis127 34 of 4 0.60Down
Male accessory glands208 74 of 4 1.00None
Virgin spermatheca145 254 of 4 0.71None
Mated spermatheca151 214 of 4 0.74None
Adult carcass163 154 of 4 0.80None
Larval CNS416 314 of 4 2.03Up
Larval Salivary gland211 144 of 4 1.03None
Larval midgut103 54 of 4 0.51Down
Larval tubule114 34 of 4 0.60Down
Larval hindgut188 124 of 4 0.92None
Larval fat body75 14 of 4 0.40Down
Larval trachea340 434 of 4 1.66Up
Larval carcass140 64 of 4 0.68Down
S2 cells (growing)210 54 of 4 1.02None
Whole fly205 74 of 4

Looking for FBgn0036134. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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