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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036135 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L2 (mRpL2):

Annotation Number : CG7636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036135
Gbrowse : chr3L:11113958-11115140 (+) // 100.0 //
Probeset : 1624278_at
Accessions : protein= NP_524022;, nucleotide= NM_079298;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0036135.
BDGP gene expression has embryonic in situ data for mRpL2: 11 pix of staining in 19 body parts.
VDRC has 2 RNAi stocks for FBgn0036135 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain226 ± 74 of 4 1.60Up
Head150 ± 14 of 4 1.10Up
Eye160 ± 24 of 4 1.16Up
Thoracicoabdominal ganglion264 ± 84 of 4 1.90Up
Salivary gland143 ± 64 of 4 1.04None
Crop159 ± 44 of 4 1.20Up
Midgut149 ± 34 of 4 1.10None
Tubule121 ± 24 of 4 0.90Down
Hindgut191 ± 14 of 4 1.40Up
Heart164 ± 54 of 4 1.19Up
Fat body158 ± 344 of 4 1.15None
Ovary166 ± 24 of 4 1.20Up
Testis89 ± 24 of 4 0.70Down
Male accessory glands127 ± 94 of 4 0.90None
Virgin spermatheca149 ± 54 of 4 1.08None
Mated spermatheca136 ± 44 of 4 0.99None
Adult carcass175 ± 164 of 4 1.30None
Larval CNS226 ± 194 of 4 1.64Up
Larval Salivary gland162 ± 64 of 4 1.18Up
Larval midgut107 ± 64 of 4 0.78Down
Larval tubule97 ± 24 of 4 0.70Down
Larval hindgut167 ± 144 of 4 1.21None
Larval fat body82 ± 34 of 4 0.60Down
Larval trachea139 ± 44 of 4 1.01None
Larval carcass133 ± 24 of 4 0.96None
S2 cells (growing)183 ± 94 of 4 1.33Up
Whole fly138 ± 34 of 4

Looking for FBgn0036135. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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