FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036139 through 18771 annotations produced 1 hits

(CG6216):

Annotation Number : CG6216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036139
Gbrowse : chr3L:11137334-11143885 (-) // 100.0 //
Probeset : 1629366_at
Accessions : protein= NP_648443; /// NP_996042;, nucleotide= NM_140186; /// NM_206320;
FlyMine data for FBgn0036139.
VDRC has 1 RNAi stocks for FBgn0036139 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.10	None
Head	2 ± 0	0 of 4	1.80	None
Eye	2 ± 1	0 of 4	1.81	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.40	None
Salivary gland	6 ± 3	0 of 4	5.74	None
Crop	5 ± 1	0 of 4	4.90	Up
Midgut	1 ± 0	0 of 4	1.20	None
Tubule	3 ± 0	0 of 4	2.70	Up
Hindgut	4 ± 0	0 of 4	4.10	Up
Heart	2 ± 0	0 of 4	1.70	None
Fat body	8 ± 1	0 of 4	6.89	Up
Ovary	0 ± 0	0 of 4	0.70	None
Testis	5 ± 0	1 of 4	4.50	Up
Male accessory glands	9 ± 3	0 of 4	7.90	None
Virgin spermatheca	5 ± 1	0 of 4	4.40	None
Mated spermatheca	3 ± 0	0 of 4	3.09	None
Adult carcass	3 ± 1	0 of 4	2.50	None
Larval CNS	1 ± 0	0 of 4	1.26	None
Larval Salivary gland	7 ± 2	0 of 4	6.26	None
Larval midgut	1 ± 0	0 of 4	1.11	None
Larval tubule	3 ± 0	0 of 4	2.60	None
Larval hindgut	4 ± 1	0 of 4	3.68	None
Larval fat body	7 ± 3	0 of 4	6.00	None
Larval trachea	1 ± 1	0 of 4	1.49	None
Larval carcass	3 ± 0	0 of 4	3.02	Up
S2 cells (growing)	0 ± 0	0 of 4	0.53	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0036139. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720