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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036141 through 18771 annotations produced 1 hits



wntless (wls):

Annotation Number : CG6210
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036141
Gbrowse : chr3L:11159714-11162741 (-) // 100.0 //
Probeset : 1626719_a_at
Accessions : protein= NP_648445; /// NP_729681;, nucleotide= NM_140188; /// NM_168450;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005768 // endosome // inferred from electronic ann
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // inferred from phy
FlyMine data for FBgn0036141.
BDGP gene expression has embryonic in situ data for CG6210: 26 pix of staining in 22 body parts.
VDRC has 3 RNAi stocks for FBgn0036141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain305 34 of 4 1.30Up
Head140 54 of 4 0.60Down
Eye91 54 of 4 0.40Down
Thoracicoabdominal ganglion274 114 of 4 1.20Up
Salivary gland1076 324 of 4 4.73Up
Crop249 84 of 4 1.10None
Midgut180 44 of 4 0.80Down
Tubule205 104 of 4 0.90Down
Hindgut188 84 of 4 0.80Down
Heart137 64 of 4 0.61Down
Fat body39 14 of 4 0.17Down
Ovary426 124 of 4 1.90Up
Testis111 24 of 4 0.50Down
Male accessory glands129 94 of 4 0.60Down
Virgin spermatheca61 74 of 4 0.27Down
Mated spermatheca83 104 of 4 0.37Down
Adult carcass62 34 of 4 0.30Down
Larval CNS568 364 of 4 2.50Up
Larval Salivary gland298 264 of 4 1.31None
Larval midgut171 174 of 4 0.75Down
Larval tubule360 84 of 4 1.60Up
Larval hindgut205 54 of 4 0.90None
Larval fat body66 34 of 4 0.30Down
Larval trachea85 74 of 4 0.38Down
Larval carcass144 54 of 4 0.63Down
S2 cells (growing)515 64 of 4 2.26Up
Whole fly227 114 of 4

Looking for FBgn0036141. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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