FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036157 through 18771 annotations produced 1 hits

(CG7560):

Annotation Number : CG7560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036157
Gbrowse : chr3L:11418249-11419495 (+) // 100.0 //
Probeset : 1635185_at
Accessions : protein= NP_648462;, nucleotide= NM_140205;
Interpro : 0004489 // methylenetetrahydrofolate reductase (NADPH) activity // inferred from sequence or structural similarity /// 0
FlyMine data for FBgn0036157.
BDGP gene expression has embryonic in situ data for CG7560: 4 pix of staining in 1 body parts.
Homophila reports that CG7560 is a close match (3e-21) to human gene MTHFR (NP_005948), a gene associated with Homocystinuria due to MTHFR deficiency, 236250 (3).
VDRC has 3 RNAi stocks for FBgn0036157 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	0 of 4	0.20	Down
Head	194 ± 10	4 of 4	4.80	Up
Eye	153 ± 15	4 of 4	3.83	Up
Thoracicoabdominal ganglion	8 ± 0	0 of 4	0.20	Down
Salivary gland	9 ± 1	0 of 4	0.24	Down
Crop	24 ± 2	4 of 4	0.60	Down
Midgut	1 ± 0	0 of 4	0.00	Down
Tubule	8 ± 2	1 of 4	0.20	Down
Hindgut	21 ± 2	4 of 4	0.50	Down
Heart	359 ± 21	4 of 4	8.94	Up
Fat body	597 ± 58	4 of 4	14.87	Up
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	4 ± 1	1 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	1385 ± 69	4 of 4	34.50	Up
Mated spermatheca	1272 ± 140	4 of 4	31.67	Up
Adult carcass	301 ± 21	4 of 4	7.50	Up
Larval CNS	4 ± 2	0 of 4	0.11	Down
Larval Salivary gland	4 ± 1	0 of 4	0.12	Down
Larval midgut	7 ± 0	0 of 4	0.18	Down
Larval tubule	5 ± 0	0 of 4	0.10	Down
Larval hindgut	10 ± 1	1 of 4	0.26	Down
Larval fat body	2 ± 0	0 of 4	0.10	Down
Larval trachea	3 ± 2	0 of 4	0.08	Down
Larval carcass	3 ± 1	0 of 4	0.09	Down
S2 cells (growing)	3 ± 1	0 of 4	0.10	Down
Whole fly	40 ± 1	4 of 4

Looking for FBgn0036157. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720