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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036161 through 18771 annotations produced 1 hits


Annotation Number : CG7551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036161
Gbrowse : chr3L:11451589-11452725 (+) // 100.0 //
Probeset : 1630499_at
Accessions : protein= NP_648466;, nucleotide= NM_140209;
Interpro : 0004454 // ketohexokinase activity // inferred from sequence or structural similarity /// 0004454 // ketohexokinase acti
FlyMine data for FBgn0036161.
BDGP gene expression has embryonic in situ data for CG7551: 6 pix of staining in 1 body parts.
Homophila reports that CG7551 is a close match (2e-44) to human gene KHK (NP_006479), a gene associated with [Fructosuria] (3).

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head3 10 of 4 0.10Down
Eye3 11 of 4 0.14Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland8 30 of 4 0.32Down
Crop1 00 of 4 0.10Down
Midgut7 20 of 4 0.30Down
Tubule3 10 of 4 0.10Down
Hindgut3 00 of 4 0.10Down
Heart2 00 of 4 0.11Down
Fat body10 33 of 4 0.39Down
Ovary3 01 of 4 0.10Down
Testis300 114 of 410.90Up
Male accessory glands3 20 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.23Down
Mated spermatheca6 11 of 4 0.22Down
Adult carcass7 20 of 4 0.30Down
Larval CNS4 22 of 4 0.16Down
Larval Salivary gland2 00 of 4 0.08Down
Larval midgut5 20 of 4 0.19Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut5 10 of 4 0.21Down
Larval fat body17 82 of 4 0.60None
Larval trachea3 30 of 4 0.14Down
Larval carcass4 00 of 4 0.18Down
S2 cells (growing)2 00 of 4 0.10Down
Whole fly27 14 of 4

Looking for FBgn0036161. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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