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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036162 through 18771 annotations produced 1 hits



(CG6140):

Annotation Number : CG6140
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036162
Gbrowse : chr3L:11456669-11458407 (-) // 99.69 //
Probeset : 1639488_at
Accessions : protein= NP_648467;, nucleotide= NM_140210;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004333 // fumarate hydratase activity // infer
FlyMine data for FBgn0036162.
Homophila reports that CG6140 is a close match (3e-179) to human gene FH (NP_000134), a gene associated with Fumarase deficiency, 606812 (3);Leiomyomatosis and renal cell cancer, 605839 (3);Multiple cutaneous and uterine leiomyomata, 150800 (3).
VDRC has 3 RNAi stocks for FBgn0036162 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland5 ± 20 of 4 0.06Down
Crop3 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart4 ± 00 of 4 0.06Down
Fat body1 ± 00 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis946 ± 554 of 412.30Up
Male accessory glands837 ± 254 of 410.90Up
Virgin spermatheca3 ± 10 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.03Down
Larval fat body71 ± 423 of 4 0.90None
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly77 ± 44 of 4

Looking for FBgn0036162. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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