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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036173 through 18771 annotations produced 1 hits



(CG7394):

Annotation Number : CG7394
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036173
Gbrowse : chr3L:11555778-11556628 (+) // 100.0 //
Probeset : 1641511_at
Accessions : protein= NP_001137933; /// NP_648475;, nucleotide= NM_001144461; /// NM_140218;
Pathway : 0001405 // presequence translocase-associated import motor // inferred from sequence or structural similarity /// 000573
Interpro : 0001671 // ATPase activator activity // inferred from sequence or structural similarity /// 0031072 // heat shock protei
FlyMine data for FBgn0036173.
BDGP gene expression has embryonic in situ data for CG7394: 4 pix of staining in 1 body parts.
Homophila reports that CG7394 is a close match (1e-31) to human gene DNAJC19;TIM14 (NP_660304), a gene associated with 3-methylglutaconic aciduria, type V, 610198 (3).
VDRC has 3 RNAi stocks for FBgn0036173 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 ± 144 of 4 0.50Down
Head199 ± 234 of 4 1.00None
Eye239 ± 194 of 4 1.14None
Thoracicoabdominal ganglion141 ± 184 of 4 0.70Down
Salivary gland323 ± 494 of 4 1.55None
Crop142 ± 104 of 4 0.70Down
Midgut176 ± 44 of 4 0.80None
Tubule120 ± 154 of 4 0.60Down
Hindgut277 ± 284 of 4 1.30None
Heart239 ± 104 of 4 1.15None
Fat body212 ± 324 of 4 1.01None
Ovary174 ± 184 of 4 0.80None
Testis423 ± 134 of 4 2.00Up
Male accessory glands225 ± 94 of 4 1.10None
Virgin spermatheca154 ± 94 of 4 0.74Down
Mated spermatheca179 ± 64 of 4 0.86None
Adult carcass357 ± 144 of 4 1.70Up
Larval CNS130 ± 94 of 4 0.62Down
Larval Salivary gland174 ± 174 of 4 0.83None
Larval midgut178 ± 144 of 4 0.85None
Larval tubule155 ± 144 of 4 0.70Down
Larval hindgut139 ± 54 of 4 0.67Down
Larval fat body124 ± 174 of 4 0.60Down
Larval trachea168 ± 394 of 4 0.81None
Larval carcass130 ± 194 of 4 0.62Down
S2 cells (growing)246 ± 314 of 4 1.18None
Whole fly209 ± 124 of 4

Looking for FBgn0036173. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime