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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036179 through 18771 annotations produced 1 hits



(CG7368):

Annotation Number : CG7368
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036179
Gbrowse : chr3L:11595822-11597569 (+) // 100.0 //
Probeset : 1633818_at
Accessions : protein= NP_001036599;, nucleotide= NM_001043134;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0036179.
Homophila reports that CG7368 is a close match (6e-11) to human gene SLUG;SNAI2;WS2D (NP_003059), a gene associated with Melanoma metastasis, modification of (1);Piebaldism, 172800 (3);Waardenburg syndrome, type IID, 608890 (3).
VDRC has 3 RNAi stocks for FBgn0036179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 14 of 453.90Up
Head10 13 of 4 8.20Up
Eye21 14 of 416.88Up
Thoracicoabdominal ganglion58 54 of 445.50Up
Salivary gland3 00 of 4 2.76Up
Crop6 10 of 4 5.30Up
Midgut2 10 of 4 2.00None
Tubule0 00 of 4 0.60Down
Hindgut4 10 of 4 3.70None
Heart6 10 of 4 5.02Up
Fat body2 20 of 4 2.12None
Ovary0 00 of 4 0.50None
Testis4 00 of 4 3.70Up
Male accessory glands9 10 of 4 7.30Up
Virgin spermatheca4 10 of 4 3.41None
Mated spermatheca0 00 of 4 0.65None
Adult carcass1 00 of 4 0.80None
Larval CNS22 34 of 417.94Up
Larval Salivary gland1 00 of 4 0.98None
Larval midgut3 00 of 4 2.31None
Larval tubule0 00 of 4 0.70None
Larval hindgut1 00 of 4 1.02None
Larval fat body1 00 of 4 1.30None
Larval trachea0 00 of 4 0.76None
Larval carcass0 00 of 4 0.59None
S2 cells (growing)0 00 of 4 0.65None
Whole fly1 00 of 4

Looking for FBgn0036179. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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