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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036180 through 18771 annotations produced 1 hits



(CG6091):

Annotation Number : CG6091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036180
Gbrowse : chr3L:11599121-11602540 (-) // 100.0 //
Probeset : 1633506_s_at
Accessions : protein= NP_001163417; /// NP_648482; /// NP_729723; /// NP_729724;, nucleotide= NM_001169946; /// NM_140225; /// NM_168465; /// NM_168466;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0036180.
BDGP gene expression has embryonic in situ data for CG6091: 4 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0036180 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 ± 24 of 4 0.70Down
Head34 ± 54 of 4 0.30Down
Eye34 ± 34 of 4 0.31Down
Thoracicoabdominal ganglion41 ± 44 of 4 0.40Down
Salivary gland90 ± 34 of 4 0.82None
Crop46 ± 34 of 4 0.40Down
Midgut39 ± 24 of 4 0.40Down
Tubule18 ± 13 of 4 0.20Down
Hindgut44 ± 44 of 4 0.40Down
Heart45 ± 54 of 4 0.42Down
Fat body42 ± 44 of 4 0.39Down
Ovary128 ± 54 of 4 1.20None
Testis851 ± 284 of 4 7.70Up
Male accessory glands40 ± 54 of 4 0.40Down
Virgin spermatheca22 ± 24 of 4 0.20Down
Mated spermatheca21 ± 24 of 4 0.20Down
Adult carcass32 ± 24 of 4 0.30Down
Larval CNS42 ± 24 of 4 0.38Down
Larval Salivary gland38 ± 24 of 4 0.35Down
Larval midgut32 ± 34 of 4 0.30Down
Larval tubule57 ± 34 of 4 0.50Down
Larval hindgut37 ± 14 of 4 0.34Down
Larval fat body115 ± 524 of 4 1.00None
Larval trachea44 ± 44 of 4 0.40Down
Larval carcass30 ± 24 of 4 0.27Down
S2 cells (growing)64 ± 14 of 4 0.58Down
Whole fly110 ± 64 of 4

Looking for FBgn0036180. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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