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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036181 through 18771 annotations produced 3 hits


Mucin 68Ca (Muc68Ca):

Annotation Number : HDC09652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036181
Gbrowse : chrUextra:25852842-27833247 (+) // 81.15 // /// chrUextra:25852842-27208596 (+) // 63.47 // /// chrUextra:25852842-27833307 (+) // 65.99 // /// chrUextra:24160259-24253841 (+) // 46.91 // /// chr3L:11610515-11613173 (-) // 100.0 // /// chr3L:11610035-11612338 (-) // 85.48 // /// chr3L:11609795-11612098 (-) // 85.06 // /// chr3L:11609075-11611378 (-) // 84.42 // /// chr3L:11609315-11611575 (-) // 83.18 // /// chr3L:11606195-11608497 (-) // 83.9 // /// chr3L:11606686-11608977 (-) // 83.11 // /// chr3L:11607395-11609698 (-) // 83.26 // /// chr3L:11608355-11610624 (-) // 82.43 // /// chr3L:11606455-11608667 (-) // 80.55 // /// chr3L:11610755-11612787 (-) // 75.4 // /// chr3L:11606118-11608018 (-) // 69.45 // /// chr3L:11610995-11612787 (-) // 66.85 // /// chr3L:11606156-11607780 (-) // 59.44 // /// chr3L:11610275-11611828 (-) // 57.67 // /// chr3L:11611235-11612787 (-) // 57.52 //
Probeset : 1623469_s_at
Accessions : protein= NP_996054;, nucleotide= NM_206332;
FlyMine data for FBgn0036181.
TRiP has 1 RNAi stocks for FBgn0036181 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 02 of 4 1.60None
Head3 ± 10 of 4 1.00None
Eye4 ± 10 of 4 1.39None
Thoracicoabdominal ganglion3 ± 10 of 4 1.10None
Salivary gland35 ± 22 of 410.66Up
Crop10 ± 10 of 4 3.10Up
Midgut6 ± 00 of 4 2.00Up
Tubule2 ± 00 of 4 0.80Down
Hindgut5 ± 10 of 4 1.70None
Heart8 ± 11 of 4 2.45Up
Fat body20 ± 24 of 4 6.10Up
Ovary3 ± 10 of 4 1.00None
Testis1 ± 00 of 4 0.50None
Male accessory glands10 ± 40 of 4 3.10None
Virgin spermatheca6 ± 11 of 4 1.95None
Mated spermatheca4 ± 00 of 4 1.20None
Adult carcass6 ± 20 of 4 1.90None
Larval CNS10 ± 43 of 4 2.99None
Larval Salivary gland3601 ± 2764 of 41075.10Up
Larval midgut7 ± 12 of 4 2.25Up
Larval tubule9 ± 01 of 4 2.80Up
Larval hindgut6 ± 02 of 4 1.93Up
Larval fat body2 ± 10 of 4 0.80None
Larval trachea9 ± 53 of 4 2.80None
Larval carcass7 ± 00 of 4 2.22Up
S2 cells (growing)31 ± 24 of 4 9.43Up
Whole fly3 ± 00 of 4


Mucin 68Ca (Muc68Ca):

Annotation Number : CT41625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036181
Gbrowse : chr3L:11603764-11613172 (-) // 99.99 // /// chr3L:11606332-11609698 (-) // 39.21 // /// chr3L:11606572-11610624 (-) // 38.93 // /// chr3L:11606812-11610387 (-) // 38.82 // /// chr3L:11606118-11609938 (-) // 38.46 // /// chr3L:11606118-11608977 (-) // 35.66 //
Probeset : 1638341_s_at
Accessions : protein= NP_996054;, nucleotide= NM_206332;
FlyMine data for FBgn0036181.
TRiP has 1 RNAi stocks for FBgn0036181 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head4 ± 20 of 4 1.10None
Eye4 ± 10 of 4 1.15None
Thoracicoabdominal ganglion3 ± 00 of 4 0.90None
Salivary gland6 ± 21 of 4 1.82None
Crop3 ± 00 of 4 0.90None
Midgut4 ± 10 of 4 1.30None
Tubule26 ± 24 of 4 7.60Up
Hindgut9 ± 01 of 4 2.70Up
Heart6 ± 10 of 4 1.92None
Fat body12 ± 42 of 4 3.61Up
Ovary2 ± 00 of 4 0.70None
Testis2 ± 10 of 4 0.60None
Male accessory glands10 ± 20 of 4 3.00Up
Virgin spermatheca8 ± 10 of 4 2.48None
Mated spermatheca3 ± 20 of 4 1.08None
Adult carcass10 ± 30 of 4 3.10None
Larval CNS4 ± 11 of 4 1.28None
Larval Salivary gland7399 ± 4194 of 42099.16Up
Larval midgut5 ± 00 of 4 1.59None
Larval tubule6 ± 01 of 4 1.90None
Larval hindgut3 ± 10 of 4 1.09None
Larval fat body6 ± 30 of 4 2.00None
Larval trachea22 ± 322 of 4 6.43None
Larval carcass3 ± 10 of 4 0.85None
S2 cells (growing)27 ± 14 of 4 7.87Up
Whole fly3 ± 10 of 4


Mucin 68Ca (Muc68Ca):

Annotation Number : LP09368
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:11603670-11606790 (-) // 100.0 //
Probeset : 1631700_at
Accessions : protein= NP_996054;, nucleotide= NM_206332;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.50None
Head3 ± 11 of 4 0.80None
Eye3 ± 10 of 4 0.89None
Thoracicoabdominal ganglion4 ± 01 of 4 1.00None
Salivary gland14 ± 32 of 4 3.57Up
Crop4 ± 11 of 4 1.00None
Midgut6 ± 01 of 4 1.50None
Tubule47 ± 54 of 411.30Up
Hindgut10 ± 14 of 4 2.50Up
Heart7 ± 03 of 4 1.83Up
Fat body13 ± 04 of 4 3.28Up
Ovary2 ± 10 of 4 0.50None
Testis5 ± 03 of 4 1.20None
Male accessory glands10 ± 11 of 4 2.50Up
Virgin spermatheca19 ± 24 of 4 4.59Up
Mated spermatheca13 ± 34 of 4 3.31None
Adult carcass7 ± 10 of 4 1.90None
Larval CNS5 ± 24 of 4 1.29None
Larval Salivary gland7351 ± 4234 of 41760.80Up
Larval midgut6 ± 01 of 4 1.63None
Larval tubule5 ± 21 of 4 1.40None
Larval hindgut2 ± 00 of 4 0.54None
Larval fat body6 ± 31 of 4 1.60None
Larval trachea19 ± 312 of 4 4.74None
Larval carcass2 ± 00 of 4 0.55None
S2 cells (growing)25 ± 14 of 4 6.17Up
Whole fly4 ± 10 of 4

Looking for FBgn0036181. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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