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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036184 through 18771 annotations produced 1 hits



Drosophila melanogaster PCID2 (PCID2):

Annotation Number : CG7351
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036184
Gbrowse : chr3L:11619539-11620820 (+) // 100.0 //
Probeset : 1633346_at
Accessions : protein= NP_648486;, nucleotide= NM_140229;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0047499 // calcium-independent phospholipase A2 act
FlyMine data for FBgn0036184.
BDGP gene expression has embryonic in situ data for CG7351: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036184 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 14 of 4 0.50Down
Head80 ± 54 of 4 0.50Down
Eye96 ± 34 of 4 0.57Down
Thoracicoabdominal ganglion75 ± 14 of 4 0.40Down
Salivary gland89 ± 64 of 4 0.52Down
Crop75 ± 44 of 4 0.40Down
Midgut75 ± 44 of 4 0.40Down
Tubule107 ± 44 of 4 0.60Down
Hindgut91 ± 34 of 4 0.50Down
Heart90 ± 44 of 4 0.53Down
Fat body111 ± 124 of 4 0.65Down
Ovary335 ± 54 of 4 2.00Up
Testis70 ± 54 of 4 0.40Down
Male accessory glands137 ± 74 of 4 0.80Down
Virgin spermatheca138 ± 84 of 4 0.81Down
Mated spermatheca114 ± 74 of 4 0.67Down
Adult carcass72 ± 24 of 4 0.40Down
Larval CNS256 ± 194 of 4 1.50Up
Larval Salivary gland167 ± 64 of 4 0.98None
Larval midgut66 ± 34 of 4 0.39Down
Larval tubule130 ± 34 of 4 0.80Down
Larval hindgut85 ± 24 of 4 0.50Down
Larval fat body125 ± 94 of 4 0.70Down
Larval trachea167 ± 54 of 4 0.98None
Larval carcass130 ± 34 of 4 0.76Down
S2 cells (growing)145 ± 14 of 4 0.85None
Whole fly171 ± 104 of 4

Looking for FBgn0036184. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime