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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036186 through 18771 annotations produced 1 hits



(CG6071):

Annotation Number : CG6071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036186
Gbrowse : chr3L:11636042-11639133 (-) // 100.0 //
Probeset : 1623166_at
Accessions : protein= NP_648488;, nucleotide= NM_140231;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0036186.
BDGP gene expression has embryonic in situ data for CG6071: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0036186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 03 of 4 0.20Down
Head9 11 of 4 0.20Down
Eye4 10 of 4 0.09Down
Thoracicoabdominal ganglion15 23 of 4 0.30Down
Salivary gland21 20 of 4 0.41Down
Crop7 10 of 4 0.10Down
Midgut6 21 of 4 0.10Down
Tubule7 01 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart4 11 of 4 0.09Down
Fat body14 24 of 4 0.28Down
Ovary7 04 of 4 0.10Down
Testis14 24 of 4 0.30Down
Male accessory glands5755 944 of 4108.70Up
Virgin spermatheca13 14 of 4 0.26Down
Mated spermatheca12 33 of 4 0.24Down
Adult carcass20 42 of 4 0.40Down
Larval CNS16 14 of 4 0.32Down
Larval Salivary gland4 11 of 4 0.09Down
Larval midgut7 11 of 4 0.15Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut7 01 of 4 0.14Down
Larval fat body10 21 of 4 0.20Down
Larval trachea11 44 of 4 0.22Down
Larval carcass9 13 of 4 0.18Down
S2 cells (growing)20 14 of 4 0.38Down
Whole fly53 44 of 4

Looking for FBgn0036186. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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