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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036188 through 18771 annotations produced 1 hits



(CG7339):

Annotation Number : CG7339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036188
Gbrowse : chr3L:11641883-11642967 (+) // 100.0 //
Probeset : 1638203_at
Accessions : protein= NP_648490;, nucleotide= NM_140233;
Pathway : 0005666 // DNA-directed RNA polymerase III complex // inferred from sequence or structural similarity
Interpro : 0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// 0003899 // DNA-di
FlyMine data for FBgn0036188.
BDGP gene expression has embryonic in situ data for CG7339: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036188 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 04 of 4 0.70Down
Head27 24 of 4 0.50Down
Eye28 04 of 4 0.55Down
Thoracicoabdominal ganglion27 34 of 4 0.50Down
Salivary gland41 34 of 4 0.80None
Crop42 24 of 4 0.80None
Midgut36 14 of 4 0.70Down
Tubule28 34 of 4 0.50Down
Hindgut33 14 of 4 0.60Down
Heart33 14 of 4 0.64Down
Fat body37 24 of 4 0.71Down
Ovary103 64 of 4 2.00Up
Testis37 24 of 4 0.70Down
Male accessory glands59 64 of 4 1.10None
Virgin spermatheca27 14 of 4 0.53Down
Mated spermatheca36 24 of 4 0.69Down
Adult carcass35 14 of 4 0.70Down
Larval CNS87 94 of 4 1.68Up
Larval Salivary gland31 31 of 4 0.61Down
Larval midgut29 14 of 4 0.56Down
Larval tubule29 44 of 4 0.60Down
Larval hindgut37 34 of 4 0.72Down
Larval fat body38 24 of 4 0.70Down
Larval trachea80 124 of 4 1.54Up
Larval carcass35 34 of 4 0.67Down
S2 cells (growing)98 34 of 4 1.89Up
Whole fly52 44 of 4

Looking for FBgn0036188. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime