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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036192 through 18771 annotations produced 1 hits



pallidin (pallidin):

Annotation Number : CG14133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036192
Gbrowse : chr3L:11683112-11684234 (-) // 100.0 //
Probeset : 1640665_at
Accessions : protein= NP_001163418; /// NP_001163419; /// NP_648494;, nucleotide= NM_001169947; /// NM_001169948; /// NM_140237;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036192.
BioGrid reports that CG14133 interacts with CG17778 CG30077 CG30428 CG7238 CG9418 CG14788 CG18449 CG2774 CG3048 CG5053 CG6521 CG6856 CG8280 CG9540 CG9882 .
VDRC has 2 RNAi stocks for FBgn0036192 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 04 of 4 1.10None
Head26 ± 24 of 4 0.90None
Eye51 ± 34 of 4 1.81Up
Thoracicoabdominal ganglion31 ± 34 of 4 1.10None
Salivary gland51 ± 64 of 4 1.79Up
Crop47 ± 44 of 4 1.70Up
Midgut41 ± 13 of 4 1.40Up
Tubule39 ± 54 of 4 1.40Up
Hindgut34 ± 24 of 4 1.20None
Heart38 ± 14 of 4 1.35Up
Fat body42 ± 54 of 4 1.48Up
Ovary50 ± 24 of 4 1.80Up
Testis19 ± 34 of 4 0.70None
Male accessory glands24 ± 30 of 4 0.90None
Virgin spermatheca23 ± 20 of 4 0.84None
Mated spermatheca22 ± 30 of 4 0.79None
Adult carcass30 ± 42 of 4 1.10None
Larval CNS22 ± 54 of 4 0.80None
Larval Salivary gland25 ± 43 of 4 0.88None
Larval midgut52 ± 32 of 4 1.83Up
Larval tubule45 ± 14 of 4 1.60Up
Larval hindgut29 ± 24 of 4 1.02None
Larval fat body39 ± 44 of 4 1.40None
Larval trachea51 ± 64 of 4 1.82Up
Larval carcass36 ± 33 of 4 1.28None
S2 cells (growing)26 ± 13 of 4 0.92None
Whole fly28 ± 34 of 4

Looking for FBgn0036192. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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