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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036194 through 18771 annotations produced 1 hits


Annotation Number : CG11652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036194
Gbrowse : chr3L:11686953-11690086 (-) // 100.0 //
Probeset : 1625173_s_at
Accessions : protein= NP_648496; /// NP_729735;, nucleotide= NM_140239; /// NM_168471;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0036194.
BDGP gene expression has embryonic in situ data for CG11652: 30 pix of staining in 23 body parts.
BioGrid reports that CG11652 interacts with CG16717 CG7265 CG15308 .
VDRC has 3 RNAi stocks for FBgn0036194 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 34 of 4 0.50Down
Head63 34 of 4 0.50Down
Eye70 74 of 4 0.52Down
Thoracicoabdominal ganglion39 24 of 4 0.30Down
Salivary gland54 93 of 4 0.40Down
Crop281 114 of 4 2.10Up
Midgut169 274 of 4 1.20None
Tubule88 64 of 4 0.60Down
Hindgut233 44 of 4 1.70Up
Heart84 84 of 4 0.62Down
Fat body103 104 of 4 0.76Down
Ovary261 204 of 4 1.90Up
Testis95 84 of 4 0.70Down
Male accessory glands85 64 of 4 0.60Down
Virgin spermatheca174 184 of 4 1.28None
Mated spermatheca78 74 of 4 0.58Down
Adult carcass111 34 of 4 0.80Down
Larval CNS150 184 of 4 1.11None
Larval Salivary gland130 84 of 4 0.96None
Larval midgut102 104 of 4 0.76None
Larval tubule110 124 of 4 0.80None
Larval hindgut105 44 of 4 0.78Down
Larval fat body69 54 of 4 0.50Down
Larval trachea76 134 of 4 0.56Down
Larval carcass114 264 of 4 0.84None
S2 cells (growing)315 384 of 4 2.33Up
Whole fly135 74 of 4

Looking for FBgn0036194. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime