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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036195 through 18771 annotations produced 1 hits



(CG6053):

Annotation Number : CG6053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036195
Gbrowse : chr3L:11690437-11692363 (-) // 100.0 //
Probeset : 1632968_at
Accessions : protein= NP_648497;, nucleotide= NM_140240;
Pathway : 0005868 // cytoplasmic dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule asso
Interpro : "0003774 // motor activity // inferred from sequence or structural similarity /// 0016787 // hydrolase activity // infer
FlyMine data for FBgn0036195.
Homophila reports that CG6053 is a close match (3e-12) to human gene CILD1;DNAI1;ICS;PCD (NP_036276), a gene associated with Ciliary dyskinesia, primary, 1, 242650 (3);Kartagener syndrome, 244400 (3).
VDRC has 3 RNAi stocks for FBgn0036195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.00None
Head8 ± 03 of 4 2.30Up
Eye1 ± 00 of 4 0.35None
Thoracicoabdominal ganglion4 ± 10 of 4 1.20None
Salivary gland4 ± 10 of 4 1.22None
Crop4 ± 10 of 4 1.10None
Midgut4 ± 00 of 4 1.10None
Tubule2 ± 00 of 4 0.60Down
Hindgut4 ± 10 of 4 1.20None
Heart1 ± 00 of 4 0.38None
Fat body2 ± 21 of 4 0.74None
Ovary1 ± 00 of 4 0.50None
Testis3 ± 00 of 4 0.80None
Male accessory glands7 ± 21 of 4 1.90None
Virgin spermatheca7 ± 21 of 4 1.86None
Mated spermatheca4 ± 10 of 4 1.09None
Adult carcass8 ± 21 of 4 2.20None
Larval CNS1 ± 00 of 4 0.33None
Larval Salivary gland0 ± 00 of 4 0.20None
Larval midgut4 ± 10 of 4 1.06None
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut2 ± 00 of 4 0.61None
Larval fat body4 ± 10 of 4 1.20None
Larval trachea2 ± 10 of 4 0.68None
Larval carcass3 ± 11 of 4 0.90None
S2 cells (growing)3 ± 00 of 4 1.03None
Whole fly3 ± 11 of 4

Looking for FBgn0036195. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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