FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036198 through 18771 annotations produced 1 hits

crimpled (crim):

Annotation Number : CG6038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036198
Gbrowse : chr3L:11703605-11704472 (-) // 100.0 //
Probeset : 1631907_at
Accessions : protein= NP_648500;, nucleotide= NM_140243;
FlyMine data for FBgn0036198.
BDGP gene expression has embryonic in situ data for CG6038: 16 pix of staining in 9 body parts.
VDRC has 1 RNAi stocks for FBgn0036198 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	78 ± 5	4 of 4	0.60	Down
Head	175 ± 5	4 of 4	1.30	Up
Eye	394 ± 11	4 of 4	2.95	Up
Thoracicoabdominal ganglion	76 ± 2	4 of 4	0.60	Down
Salivary gland	511 ± 46	4 of 4	3.82	Up
Crop	276 ± 18	4 of 4	2.10	Up
Midgut	54 ± 1	3 of 4	0.40	Down
Tubule	49 ± 0	4 of 4	0.40	Down
Hindgut	181 ± 3	4 of 4	1.40	Up
Heart	51 ± 2	4 of 4	0.39	Down
Fat body	37 ± 4	0 of 4	0.28	Down
Ovary	276 ± 5	4 of 4	2.10	Up
Testis	111 ± 4	4 of 4	0.80	Down
Male accessory glands	186 ± 10	4 of 4	1.40	Up
Virgin spermatheca	158 ± 4	4 of 4	1.18	Up
Mated spermatheca	220 ± 29	4 of 4	1.65	None
Adult carcass	148 ± 8	4 of 4	1.10	None
Larval CNS	109 ± 10	4 of 4	0.82	Down
Larval Salivary gland	555 ± 21	4 of 4	4.15	Up
Larval midgut	62 ± 5	4 of 4	0.46	Down
Larval tubule	48 ± 3	4 of 4	0.40	Down
Larval hindgut	233 ± 17	4 of 4	1.75	Up
Larval fat body	100 ± 5	4 of 4	0.80	Down
Larval trachea	592 ± 57	4 of 4	4.43	Up
Larval carcass	184 ± 6	4 of 4	1.38	Up
S2 cells (growing)	88 ± 3	4 of 4	0.66	Down
Whole fly	133 ± 6	4 of 4

Looking for FBgn0036198. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720