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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036198 through 18771 annotations produced 1 hits



crimpled (crim):

Annotation Number : CG6038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036198
Gbrowse : chr3L:11703605-11704472 (-) // 100.0 //
Probeset : 1631907_at
Accessions : protein= NP_648500;, nucleotide= NM_140243;
FlyMine data for FBgn0036198.
BDGP gene expression has embryonic in situ data for CG6038: 16 pix of staining in 9 body parts.
VDRC has 1 RNAi stocks for FBgn0036198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 54 of 4 0.60Down
Head175 54 of 4 1.30Up
Eye394 114 of 4 2.95Up
Thoracicoabdominal ganglion76 24 of 4 0.60Down
Salivary gland511 464 of 4 3.82Up
Crop276 184 of 4 2.10Up
Midgut54 13 of 4 0.40Down
Tubule49 04 of 4 0.40Down
Hindgut181 34 of 4 1.40Up
Heart51 24 of 4 0.39Down
Fat body37 40 of 4 0.28Down
Ovary276 54 of 4 2.10Up
Testis111 44 of 4 0.80Down
Male accessory glands186 104 of 4 1.40Up
Virgin spermatheca158 44 of 4 1.18Up
Mated spermatheca220 294 of 4 1.65None
Adult carcass148 84 of 4 1.10None
Larval CNS109 104 of 4 0.82Down
Larval Salivary gland555 214 of 4 4.15Up
Larval midgut62 54 of 4 0.46Down
Larval tubule48 34 of 4 0.40Down
Larval hindgut233 174 of 4 1.75Up
Larval fat body100 54 of 4 0.80Down
Larval trachea592 574 of 4 4.43Up
Larval carcass184 64 of 4 1.38Up
S2 cells (growing)88 34 of 4 0.66Down
Whole fly133 64 of 4

Looking for FBgn0036198. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime