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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036202 through 18771 annotations produced 1 hits


Annotation Number : CG6024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036202
Gbrowse : chr3L:11726688-11758898 (-) // 100.0 //
Probeset : 1636848_at
Accessions : protein= NP_001097587; /// NP_001097588; /// NP_001097589;, nucleotide= NM_001104117; /// NM_001104118; /// NM_001104119;
FlyMine data for FBgn0036202.
BDGP gene expression has embryonic in situ data for CG6024: 9 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0036202 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036202 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain942 254 of 447.40Up
Head145 94 of 4 7.30Up
Eye60 94 of 4 3.07Up
Thoracicoabdominal ganglion537 84 of 427.00Up
Salivary gland18 41 of 4 0.94None
Crop7 11 of 4 0.30Down
Midgut3 00 of 4 0.20Down
Tubule9 02 of 4 0.50Down
Hindgut4 12 of 4 0.20Down
Heart11 14 of 4 0.59Down
Fat body9 14 of 4 0.50Down
Ovary3 01 of 4 0.20Down
Testis5 02 of 4 0.30Down
Male accessory glands12 11 of 4 0.60Down
Virgin spermatheca8 12 of 4 0.43Down
Mated spermatheca11 14 of 4 0.59Down
Adult carcass10 10 of 4 0.50Down
Larval CNS703 424 of 435.41Up
Larval Salivary gland7 21 of 4 0.39Down
Larval midgut8 13 of 4 0.41Down
Larval tubule7 03 of 4 0.40Down
Larval hindgut5 01 of 4 0.26Down
Larval fat body7 10 of 4 0.40Down
Larval trachea5 22 of 4 0.30Down
Larval carcass8 12 of 4 0.40Down
S2 cells (growing)4 00 of 4 0.20Down
Whole fly19 14 of 4

Looking for FBgn0036202. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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