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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036203 through 18771 annotations produced 1 hits


Mucin 68D (Muc68D):

Annotation Number : CG6004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036203
Gbrowse : chr3L:11760400-11765181 (-) // 100.0 //
Probeset : 1626309_at
Accessions : protein= NP_648504;, nucleotide= NM_140247;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016490 // structural constituent of peritrophic me
FlyMine data for FBgn0036203.
VDRC has 3 RNAi stocks for FBgn0036203 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head181 ± 1343 of 4 0.20Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland5 ± 30 of 4 0.01Down
Crop188 ± 1652 of 4 0.20Down
Midgut4447 ± 1724 of 4 5.80Up
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.01Down
Fat body3 ± 20 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.00Down
Mated spermatheca2 ± 10 of 4 0.00Down
Adult carcass48 ± 362 of 4 0.10Down
Larval CNS2 ± 11 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut12 ± 31 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.00Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly770 ± 664 of 4

Looking for FBgn0036203. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime