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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036206 through 18771 annotations produced 1 hits



(CG5964):

Annotation Number : CG5964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036206
Gbrowse : chr3L:11783311-11786383 (-) // 100.0 //
Probeset : 1635108_at
Accessions : protein= NP_648507;, nucleotide= NM_140250;
FlyMine data for FBgn0036206.
VDRC has 2 RNAi stocks for FBgn0036206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.50Down
Head9 20 of 4 0.90None
Eye2 00 of 4 0.26Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland16 60 of 4 1.43None
Crop2 10 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule3 00 of 4 0.30Down
Hindgut3 10 of 4 0.30Down
Heart3 10 of 4 0.27Down
Fat body13 50 of 4 1.21None
Ovary3 10 of 4 0.30Down
Testis53 24 of 4 4.80Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.52None
Mated spermatheca9 00 of 4 0.85None
Adult carcass7 10 of 4 0.70None
Larval CNS5 20 of 4 0.44Down
Larval Salivary gland2 00 of 4 0.18Down
Larval midgut1 00 of 4 0.15Down
Larval tubule2 00 of 4 0.20Down
Larval hindgut5 10 of 4 0.44Down
Larval fat body16 51 of 4 1.50None
Larval trachea2 10 of 4 0.19Down
Larval carcass9 10 of 4 0.81None
S2 cells (growing)2 10 of 4 0.22Down
Whole fly11 10 of 4

Looking for FBgn0036206. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime