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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036212 through 18771 annotations produced 1 hits



chr3L:11813427-11815195 (-) // 100.0 // (PP4-like):

Annotation Number : CG11597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640848_at
Accessions : protein= , nucleotide= NP_001036602; /// NP_001163423; /// NP_648513;
Pathway : 0006470 // protein dephosphorylation // non-traceable author statement
Interpro : 0000159 // protein phosphatase type 2A complex // inferred from sequence or structural similarity


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 24 of 4 2.10Up
Head16 04 of 4 1.00None
Eye8 12 of 4 0.52Down
Thoracicoabdominal ganglion43 34 of 4 2.60Up
Salivary gland3 10 of 4 0.21Down
Crop12 13 of 4 0.80None
Midgut7 10 of 4 0.50Down
Tubule7 00 of 4 0.50Down
Hindgut11 12 of 4 0.70None
Heart8 12 of 4 0.49Down
Fat body5 31 of 4 0.36Down
Ovary9 04 of 4 0.60Down
Testis149 14 of 4 9.10Up
Male accessory glands22 12 of 4 1.40Up
Virgin spermatheca3 11 of 4 0.20Down
Mated spermatheca4 12 of 4 0.26Down
Adult carcass6 10 of 4 0.40Down
Larval CNS72 84 of 4 4.42Up
Larval Salivary gland3 10 of 4 0.22Down
Larval midgut2 10 of 4 0.16Down
Larval tubule11 11 of 4 0.70None
Larval hindgut5 00 of 4 0.33Down
Larval fat body34 134 of 4 2.10None
Larval trachea9 12 of 4 0.56Down
Larval carcass3 10 of 4 0.19Down
S2 cells (growing)9 12 of 4 0.57Down
Whole fly16 14 of 4

Looking for FBgn0036212. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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