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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036218 through 18771 annotations produced 1 hits


(CG14128):

Annotation Number : CG14128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036218
Gbrowse : chr3L:11872320-11874117 (+) // 100.0 //
Probeset : 1624938_at
Accessions : protein= NP_001163424; /// NP_001163425; /// NP_001163426; /// NP_648519;, nucleotide= NM_001169953; /// NM_001169954; /// NM_001169955; /// NM_140262;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036218.
BioGrid reports that CG14128 interacts with CG4832 .
VDRC has 2 RNAi stocks for FBgn0036218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.13Down
Crop2 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule6 ± 00 of 4 0.10Down
Hindgut6 ± 20 of 4 0.10Down
Heart2 ± 10 of 4 0.04Down
Fat body7 ± 10 of 4 0.13Down
Ovary2 ± 00 of 4 0.00Down
Testis762 ± 194 of 414.20Up
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca7 ± 20 of 4 0.13Down
Mated spermatheca4 ± 10 of 4 0.08Down
Adult carcass10 ± 30 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.07Down
Larval Salivary gland3 ± 00 of 4 0.06Down
Larval midgut3 ± 20 of 4 0.07Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.10Down
Larval fat body103 ± 423 of 4 1.90None
Larval trachea6 ± 51 of 4 0.13Down
Larval carcass8 ± 20 of 4 0.16Down
S2 cells (growing)3 ± 10 of 4 0.07Down
Whole fly53 ± 32 of 4

Looking for FBgn0036218. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime